Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2467 ATGAGTCAACTCGGTCTCATATTGCAGGAACCGCAGAGGGAGCAGAGAACCATTCTGGGCTTGCTAAGGGAGCAAATGGACGGCGTAGATGGAGGCGCTCGGAGAAGGCGGAGCTTCAAGGAACGGTTAGGATTCATCGGCTTGGGTTGCTGTGGGGCCAATTGGGGATTGCGTTCAACCTCGGTAACCGTCAGGCCTGAAGAACAACCGCAACGCTCTCCGGAACCGTTGCCGGGGCACGACTGCGTGGGTCCGAGCTCGTCGGGAATGAATCTGGCGGCGGCGTTGGCGGCGGAACGACAGCTCCGGGGGCCACAGGGAGAACGGGAACGGGTTATGGGCGGGGGTAGGGCGCCGGGGACACCATGGAGGGTGTCGTTGATGAGGCTGCTGGAGGAGACGGAGGTTGGGGACTCGGCGGCTGTGACGACGGAGAAAAGAGGAGGAGAAGAGGGGAATGATTCGGTGTGTTGCGTGTGCATGGGAAGGAATAAAGGTGCGGCGTTCATACCATGCGGGCACACTTTTTGCAGGGTGTGTTCCCGGGAGCTGTGGCTGAATCGAGGGTCTTGCCCACTTTGCAATCGTAGCATCATCGAGATTCTTGACATTTTCTAG 618 0.5906 MSQLGLILQEPQREQRTILGLLREQMDGVDGGARRRRSFKERLGFIGLGCCGANWGLRSTSVTVRPEEQPQRSPEPLPGHDCVGPSSSGMNLAAALAAERQLRGPQGERERVMGGGRAPGTPWRVSLMRLLEETEVGDSAAVTTEKRGGEEGNDSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSIIEILDIF* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2467 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 205 IPR013083 -
Lja6g2467 205 SUPERFAMILY RING/U-box 151 202 - -
Lja6g2467 205 PANTHER OS01G0917900 PROTEIN 14 205 - -
Lja6g2467 205 CDD RING-HC 157 194 - -
Lja6g2467 205 Pfam Zinc finger, C3HC4 type (RING finger) 154 200 - -
Lja6g2467 205 SMART ring_2 157 194 IPR001841 -
Lja6g2467 205 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 14 205 - -
Lja6g2467 205 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2467 Lja-Chr6 53571412 53572029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2467 18 205 C3H Transcription Factor Family AT4G22250 56.500 3.27e-61 188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4298 4 76605170 76606393 Lja6g2467 6 53571412 53572029 PCT