Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2460 ATGGAAGGTAATAATTCTAATTGTAATGGCCCTTCTTCTTCATATTTGATGGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCTATGTCTATGATGATGATGCCTTTAGTCACTTCTCATCATCAAATAAATCCTCCAAATCCTCATCATCATCATAATAATAACAATAATAATGCAAACACAAACAACTGTCTCTTCCTTCCCATTCCTTCTTCCACCAACTGCAATAGCAGTGCAAGCCCTTCCATCATGCTTGATAATAACACCACCCCTACCAACAACCCTGGGTTAGGATATTACTTCATGGAGAGTGACCACCACCACCACAACAACAACAATGGAAGCTCCTCTTCCTCTTCTCCAGCTGTCAAGGCCAAGATCATGGCCCATCCTCTCTACCAACGCCTCCTAGCAGCCTATGTCAATTGTCAAAAGGTGGGAGCACCACCAGAAGTGGTGGCGAGGTTGGAAGAAGCGTGCGGTTCTGCGGTGGGGATGGCCGGTGATGCTGTTGGGTCAGGTTGTATTGGTGAAGATCCAGCTCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGACCAAGTATGAGCAAGAGCTCTCCAAACCATTAAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTTTCAGTTCAAAAATCTCACAGTTTCTTCTGACGTTGGTTGTAATGAGGGCACTGAAAGGAACACTGGATCATCTGAAGAGGATGCTGATCTATACAACATGATAGATCCTCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGTAAGTATAGCGGATACTTGGGGAGTTTGAAGCAGGAATTCATGAAGAAGAGGAAGAAAGGAAAGCTACCAAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAATCACAGAAGCTGGCACTGGCAGAGTCAACAGGTTTGGATCAGAAACAAATAAACAACTGGTTTATCAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGATATGCAGTTTATGGTTGTGGACCCAAGCCATCCTCACTATTACATGGATAATGTTATGAGTGCTCCCTTTCCCATGGATCTCTCCAACCACATGCTCTAG 1131 0.4474 MEGNNSNCNGPSSSYLMAFGENSGGLCPMSMMMMPLVTSHHQINPPNPHHHHNNNNNNANTNNCLFLPIPSSTNCNSSASPSIMLDNNTTPTNNPGLGYYFMESDHHHHNNNNGSSSSSSPAVKAKIMAHPLYQRLLAAYVNCQKVGAPPEVVARLEEACGSAVGMAGDAVGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIEFQFKNLTVSSDVGCNEGTERNTGSSEEDADLYNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHYYMDNVMSAPFPMDLSNHML* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2460 376 PANTHER - 8 365 - -
Lja6g2460 376 SMART HOX_1 280 345 IPR001356 GO:0003677
Lja6g2460 376 ProSiteProfiles 'Homeobox' domain profile. 278 341 IPR001356 GO:0003677
Lja6g2460 376 SUPERFAMILY Homeodomain-like 280 356 IPR009057 -
Lja6g2460 376 Pfam ELK domain 258 279 IPR005539 GO:0003677
Lja6g2460 376 SMART KNOX2_2 172 223 IPR005541 GO:0003677|GO:0005634
Lja6g2460 376 Pfam Homeobox KN domain 298 337 IPR008422 GO:0003677|GO:0006355
Lja6g2460 376 SMART KNOX1_2 121 165 IPR005540 GO:0003677|GO:0005634
Lja6g2460 376 ProSitePatterns 'Homeobox' domain signature. 316 339 IPR017970 GO:0000981|GO:0006355
Lja6g2460 376 Pfam KNOX2 domain 175 222 IPR005541 GO:0003677|GO:0005634
Lja6g2460 376 Gene3D - 283 345 - -
Lja6g2460 376 ProSiteProfiles ELK domain profile. 258 278 IPR005539 GO:0003677
Lja6g2460 376 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 365 - -
Lja6g2460 376 SMART ELK_2 258 279 IPR005539 GO:0003677
Lja6g2460 376 Pfam KNOX1 domain 122 160 IPR005540 GO:0003677|GO:0005634
Lja6g2460 376 CDD homeodomain 290 342 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2460 Lja-Chr6 53502782 53508300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2460 123 376 Homeobox Transcription Factor Family AT1G62360 77.481 1.10e-126 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lja6g2460 KNOX2 9.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2460 - - gmx:100805837 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4292 4 76558854 76562471 Lja6g2460 6 53502782 53508300 PCT