Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2458 ATGGCTCATCATCATCATCAACATGCCACTTCCTCTGTTTCGCTATTTCTCGCTGAATTCTTCTCATTCTCTTTGATTCTCGCTGCTGCTCTTCTTCCTATTGCCTCAGCCAACACTGACCCTTCTGATGTTCAAGCTCTTCAGGTCATGTACAACTCGTTGAACAGTCCATCTATGCTAACGGGTTGGAAAGTCGGCGGTGGTGATCCATGCGGAGAGTCATGGAAAGGGATAACATGTGAGGGCTCAGCTATTGTTTCAATTGAGCTTTCAGGTTTAGGACTCAACGGAACTCTGGGATACTTGCTTTCTAACCTTATGTCACTGAGAAAGCTTGACTTAAGTGACAACAAGATCCACGACGCCATTCCCTATCAGTTGCCGCCGAATCTTACAAGCCTAAATCTTGCAAGAAATAACTTAACTGGGAATCTTCCTTATTCTATTTCTATCATGGCTTCACTCAATTATCTGAATTTAAGCAATAATTTGCTCTCCCAGTCAATTGGTGACATTTTTGCTAATCTTACTAATCTTGCTAACCTGGATCTATCTTTCAATAACTTTACAGGGGATCTTCCTCCTTCATGTGTTTCACTGTCCAAACTTTCTTCGCTCTTCTTGCAGAAGAACCAGTTGACTGGCTCTCTTATTGTTCTTGTTGGTTTGCCTTTGGAGACTTTAAATGTGGCAAACAATAATTTCAGTGGATCGATACCACACGAGCTTAATTCGGTCCAGAATTTCATATATGATGGAAATTCTTTTGATAATGCTCCTGCTCTTCCACCGTCAGCTTCTACTTCACCCTCACCTAGTGGACCTCGTTCAAGTCATCACCATTCTGGGTCTGGTTCACGTAATAAAACAAAGGATTCTGATAATGAAAATTCTGATGGCAGTAAGAGTTTTTCAGCAGGGGCTATTGTAGGCATTAGTTTAGGTTCAGTGTTGGTGGCTGTTTTCGTGCTACTTGCTCTTGTTTTCTGTTTCCGAAAGCTAAAAGGGAAGGAAAAGGGTGCAAGAACATCTAGTGGCAGCCTTCCTCCTGGAATCACTAATGTAACTCCACAGATGCAAGAGCAAAGGGTGAAAAGTGCTGCTGTTACAAATCTCAAGCCTCGACCTCCAGCAGAAAATGTAACAGTGGAGAGGGTACCTGTAAAAAGTGGATCTGTAAAGCAGATGAAGTCACCTATAACTTCCACATCGTACACAATTGCTTCTCTCCAGAGTGCAACAAATAGCTTTAGTCAAGAATTTATTATTGGTGAAGGTTCTCTTGGTCGAGTTTACAAGGCTGATTTCCCCAATGGGAAGACAATGGCCATTAAGAAGATTGACAACTCAGCACTATCATTACAAGAGGAAGACAATTTTCTTGAAGCTGTTTCGAACATGTCACGCTTGAGGCATCCAAACATTGTTACATTGGCTGGATACTCTGCAGAGCACGGCCAGCGCCTTCTAGTTTACGAGTATATAGGAAATGGAAATCTACATGACATGCTCCATTTTGCTGAGGACAGCAGCAAGGATTTATCTTGGAATGCCCGTGTACGCATAGCACTTGGCACGGCCAGGGCCTTAGAATACTTGCATGAAGTGTGCTTGCCTTCTGTTGTGCATAGAAATTTCAAATCAGCAAATATTTTACTTGATGAGGAGCTCAATCCTCACCTATCTGACAGTGGCTTAGCTGCTCTAACACCAAATACCGAACGACAGGTATCAACTCAGATGGTTGGTTCATTTGGTTATAGTGCTCCTGAGTTTGCATTATCAGGACTATACACTGTAAAAAGTGATGTTTACAGCTTTGGTGTGGTTATGCTTGAACTATTAACTGGCCGGAAGCCACTTGACAGTTCAAGAGTCAGATCAGAGCAATCACTTGTGAGGTGGGCTACTCCTCAACTCCATGATATAGATGCCTTGGCCAAAATGGTTGACCCTACTCTGAATGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGCCGGAACCTGAGTTTCGACCTCCGATGTCTGAGGTGGTGCAAGCATTGGTACGGTTAGTGCAAAGAGCAAGTGTGGTTAAAAGGAGACCCAGTGAGGAATATGGTTTTGGTCACAAAACCCCTGACCATGAGGGCATAGACATGTCATTTTAA 2178 0.4311 MAHHHHQHATSSVSLFLAEFFSFSLILAAALLPIASANTDPSDVQALQVMYNSLNSPSMLTGWKVGGGDPCGESWKGITCEGSAIVSIELSGLGLNGTLGYLLSNLMSLRKLDLSDNKIHDAIPYQLPPNLTSLNLARNNLTGNLPYSISIMASLNYLNLSNNLLSQSIGDIFANLTNLANLDLSFNNFTGDLPPSCVSLSKLSSLFLQKNQLTGSLIVLVGLPLETLNVANNNFSGSIPHELNSVQNFIYDGNSFDNAPALPPSASTSPSPSGPRSSHHHSGSGSRNKTKDSDNENSDGSKSFSAGAIVGISLGSVLVAVFVLLALVFCFRKLKGKEKGARTSSGSLPPGITNVTPQMQEQRVKSAAVTNLKPRPPAENVTVERVPVKSGSVKQMKSPITSTSYTIASLQSATNSFSQEFIIGEGSLGRVYKADFPNGKTMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHPNIVTLAGYSAEHGQRLLVYEYIGNGNLHDMLHFAEDSSKDLSWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDSGLAALTPNTERQVSTQMVGSFGYSAPEFALSGLYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSEEYGFGHKTPDHEGIDMSF* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2458 725 Pfam Protein kinase domain 420 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2458 725 SUPERFAMILY L domain-like 39 248 - -
Lja6g2458 725 Pfam Leucine rich repeat 129 189 IPR001611 GO:0005515
Lja6g2458 725 Gene3D Phosphorylase Kinase; domain 1 380 494 - -
Lja6g2458 725 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 34 721 - -
Lja6g2458 725 SUPERFAMILY Protein kinase-like (PK-like) 394 691 IPR011009 -
Lja6g2458 725 ProSiteProfiles Protein kinase domain profile. 417 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2458 725 MobiDBLite consensus disorder prediction 261 301 - -
Lja6g2458 725 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Lja6g2458 725 ProSiteProfiles Leucine-rich repeat profile. 108 129 IPR001611 GO:0005515
Lja6g2458 725 Gene3D Ribonuclease Inhibitor 40 273 IPR032675 -
Lja6g2458 725 PANTHER OS01G0253100 PROTEIN 34 721 IPR045271 GO:0004714|GO:0006468
Lja6g2458 725 Gene3D Transferase(Phosphotransferase) domain 1 495 711 - -
Lja6g2458 725 CDD STKc_IRAK 423 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2458 Lja-Chr6 53482829 53494439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2458 152 725 Strubbelig Receptor Gene Family AT4G22130 70.833 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Lja6g2458 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2458 - - gmx:100781455 1110.9