Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2455 ATGACTACAAAACCAAACAGAGCATTTTTCTTAATTTACTTTCTGTTTCTATTGTTGATCATTATCAAAGCTCAAGGAAGCTGTGTGTCTGGTTGCAACCTTGCTCTAGCTTCCTATACCATATGGCAAGGCGCAAACCTCACTTACATTAGCAAGCTATTTGGGAAGGAACCTTCAGAGATTATGAAATACAACCCAAACGTGAAGAACCCTGATGTGATTCAGAGCGAAACGCAAATCAACGTGCCGTTCTCATGTGAATGCCTCGACGGGATTTTCCAGGGACACACGTTCTCTTACACCATGCAAGCCGGCAACACCTACAAATCAATTGCCAAGGTTGATTTCTCGAATCTCACCACGGAAGAGTGGGTGACCAGGGTGAACCGTTATAAGCCCAATGATATACCCATCGGTGTGAAGATCAATGTCACCATTAACTGCTCTTGTGGAGATGAACGTGTGTCTAAGGGTTATGGGCTGTTTCTGACGTACCCGCTCCGCCCCGGGGATGACTTGCCGCGGCTTGCGGTGGAGTCCGGTGTGTCGGCGGAGGTGCTGCAAGGTTACAACGCCGGCGCTGATTTTAGCGCCGGGAATGGACTTGTCTTTCTGCCGGCCAAAGATGAAAATGGAAACTTTCCACCACTACAGAAGCTGGGGAGATCAGGTATTTCCCCTGGAGCCATTGCTGGCATAGTTGTGGGAGGAGCTGTTGTGATCTTGTTGTTGGCATTTGCTTCATATGTTGGGCTAAATAGAAGAACCAAAGTGGATGAAGTAAGCCTTCTCCCAGTCCCAGGATCATATGAAGATCATAATAGTCAACAACTCCATCATGGTTGTGGAAGCAGCATGTATAAGGCATCAGAATCTTCTACTGTAGTTTCTCCAAGGTTGACAGGAATTACAGTGGACAAGTCAGTGGAGTTCCCATATGAGGAGCTAGCAAAAGCTACTGATAGTTTTAGCAATGCTAATATAATTGGTCGAGGTGGCTTTGGATCGGTTTACTATGCTGAGCTTCGAAATGAGAAAGCGGCAATTAAAAAGATGGATATGCAAGCTTCAAACGAATTCCTTGCTGAACTTAAGGTTCTAACACACGTCCATCACTTGAACTTGGTGAGGTTAATAGGATATTGTGTTGAAGGCTCCTTATTTTTGGTTTATGAGTACATTGAGAATGGCAATTTAAGTGAACATTTGCGTGGCTCAGGGAGGGATCCGTTATCATGGCCAGCTAGAGTTCAAATTGCCTTGGATTCAGCAAGAGGGTTGGAATACATACATGAACACACAGTTCCTGTCTACATCCATAGAGATATTAAATCAGCAAACATTTTGATAGACAAAAACTTCCGTGGAAAGGTTGCAGATTTTGGTCTGACAAAATTGACTGAATATGGTAGTTCTTCATTACAAACGCGTCTTGTGGGTACATTTGGTTACATGCCTCCAGAATATGCACAATATGGTGAAATTTCCCCCAAAGTAGATGTGTATGCCTTTGGAGTTGTTCTATATGAACTTGTATCTGGCAAGGAAGCTATTGTGAGGACAAATGGGCCTGAGAACGAGTCAAAAGCATTAATTGCCTTGTTTGAAGAAGTTCTTGGTCAGCCAGACCCAAAAGAATATCTTGGTAAACTTGTTGACCCCAGGCTTGGTGACAGCTACCCTCTTGACTCCGTATTTAAGGTGTCTCAGCTAGCTAAAGCATGTACACATGAAAACCCTCAACTTAGGCCAAGCATGAGATCAATTGTAGTTGCCTTAATGACACTGACATGTGCAGCTGAGGATTGGGATGTTGGTTCCTTCTATGAAAATCAAGCTTTGGTGCATCTAATGTCTGGAAGATAG 1866 0.4389 MTTKPNRAFFLIYFLFLLLIIIKAQGSCVSGCNLALASYTIWQGANLTYISKLFGKEPSEIMKYNPNVKNPDVIQSETQINVPFSCECLDGIFQGHTFSYTMQAGNTYKSIAKVDFSNLTTEEWVTRVNRYKPNDIPIGVKINVTINCSCGDERVSKGYGLFLTYPLRPGDDLPRLAVESGVSAEVLQGYNAGADFSAGNGLVFLPAKDENGNFPPLQKLGRSGISPGAIAGIVVGGAVVILLLAFASYVGLNRRTKVDEVSLLPVPGSYEDHNSQQLHHGCGSSMYKASESSTVVSPRLTGITVDKSVEFPYEELAKATDSFSNANIIGRGGFGSVYYAELRNEKAAIKKMDMQASNEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSEHLRGSGRDPLSWPARVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEISPKVDVYAFGVVLYELVSGKEAIVRTNGPENESKALIALFEEVLGQPDPKEYLGKLVDPRLGDSYPLDSVFKVSQLAKACTHENPQLRPSMRSIVVALMTLTCAAEDWDVGSFYENQALVHLMSGR* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2455 621 Pfam LysM domain 39 83 IPR018392 -
Lja6g2455 621 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-LIKE 9 621 - -
Lja6g2455 621 Pfam Protein tyrosine and serine/threonine kinase 327 592 IPR001245 GO:0004672|GO:0006468
Lja6g2455 621 ProSiteProfiles LysM domain profile. 37 82 IPR018392 -
Lja6g2455 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Lja6g2455 621 ProSiteProfiles Protein kinase domain profile. 323 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2455 621 SUPERFAMILY Protein kinase-like (PK-like) 300 593 IPR011009 -
Lja6g2455 621 Gene3D Phosphorylase Kinase; domain 1 303 393 - -
Lja6g2455 621 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 621 IPR044812 GO:0019199|GO:0045087
Lja6g2455 621 SMART serkin_6 323 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2455 621 Gene3D Transferase(Phosphotransferase) domain 1 394 604 - -
Lja6g2455 621 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Lja6g2455 621 CDD STKc_IRAK 329 590 - -
Lja6g2455 621 Gene3D LysM domain 27 88 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2455 Lja-Chr6 53455031 53462602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2455 15 621 Receptor kinase-like Gene Family AT3G21630 54.943 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lja6g2455 PK_Tyr_Ser-Thr 6.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2455 - K13429 gmx:100802308 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2455 6 53455031 53462602 Lja6g2455 6 53455031 53462602 ECH
Lja6g2455 6 53455031 53462602 Lja4g3887 4 71546316 71547905 ECH