Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2454 ATGAATGTTGGATATCAGAGACAAGGAAAGTCAAGTCAACATTCTGGTGAGAAGTTGGATTTCAGAAGGTGTTCAAATTCCTTTGGAATTCCACAGACACAAAATCAAGGATGGTGTTATGAGAAACCAAATTCAGGAAGAGACAGATGCACTCTGCTCCGTATAAAGATGACTCCTGCATTGCAAAGAAAAGTTTCAGTTTGGCTTGGAGAGAAGTCAAATCAAGTTACTGATAGTAACCCTAACAAAATCTCAAGATGCTCAAGAGATTCTGAAGTTTCAAAGAAGAGAAAGGCTCAAGAAGCTCATAAACATCATGATAATGAAAAATCAAAGTCAGTAGGGAAAGAAAATGTTCGAGGATTTTCAAAGAGTACTAGTAAACTTCTTCCATCCAGGAAAGGGAATGAGCAGAAGAAGTGTCTTAAAAGAAAGTTTGAAGACAAGATGTTGAATAACAACTTGGAACAAGATGCTCTTTCAAAGTCCAGAAGCAAAGCTAGAAAACTGGATAATGTGATGATGGACAATGACAAAAACTCCAGAAAATGTCATCAGTGCAAGAAAAAAGAAAGATCTGCATTTGTACCTTGCACTCAATGTCAGAAAATGTACTGTCTGCGGTGCATCAAACAATGGTATCCAGCTATGTCAATAGCAGATATGGCAGAGATGTGCCCCTTTTGCCGTAAAAATTGCAATTGTAACATTTGCTTGCGTTCACGAGGAACCATTAAGGCACACAAGACAATCACAGATGGTGAAAAAGTCCAGCATCTCCAATATATGATTTACTCACTTCATCCATTTATGCAAAAAATTCATGGAGAACAAAGTCAAGAGCAAGAGATTGAAGCTAAAATACAAGGAAAAGCATGTTCTGAGATTGAGATACCACCATCTGCTTGTGGCGTCAATGAACGCATCTATTGTGATCATTGTGCTACTTCAATCATTGACCTTCATCGAAGCTGCCCCAAGTGTTCCTTTGAAATCTGCCTTAACTGTTGCAAAGAAATACGCAATGGAAGTATTTCACCCCGGTCTGAAGTGAAGTTTCAATACATGAATAGGGGGGTTGACTATATGCATGGTGGTTATCCTTTACCAGCATCTTGTGAATTAGGGACTTCAGAAGGTCACATTAAGAAATTTTCCAAATGGAGTGCTAACGGTGATGGAAGTGTTAGATGTGCACCAGTAGAACTTGGGGGTTGCGGTGGCTCTAGGTTGGAGCTTAAGCGCGTGCTTCCAAATGGGTGGATATCTGATTTGGAAGCCAAAGCTCGTCACATTCTAAAAACTTTCTGCCAAATTGAACAAACAAATCTTCAGAAAGAAGCAGTACCAAGTTGTAATTCTATGATAAGAGCTGCTTTTAGAGATGGTACTAATGACAATAACATATACTGTCCTGTCTCAAGTGACCTCAAAAAAGAAGGGCTATGTCTCTTCCAAAAGCATTGGATTAGCGGTGAACCGATCATAGTTCGTGATGTTCTTAAAAAAGGGACAGGTTTGAGTTGGGAACCAATGGTCACATGGCGAGCAATTTGTGAAAATTTTGGCTCAAATCGGTCAGAAGTGAAGGCCATTGAATGCTTGCCTAGTTATGAGGTGGAAATTAGCACTCGTGAGTTCTTCAAAGGTTATACAGAAGGAAGAACATATAGCAATCTGTGGCCAGAGATGCTAAAGCTAAGAGACTGGCCCCCCTCTGACAAGTTTGATGATGTTTTACCGCGCCATTGTGACGAGTTTATCCGTTGCTTGCCATTTCAAGAGTATTGTGATCCTCGAGCCGGAATCCTCAACCTTGCTGCAAGGTTGCCAGCCCAATACTTAAAGCCTGACTTGGGTCCAAAATCTTACATTGCTTATGGGACTAAAGAAGAACTTGGAAGAGGAGATTCTGTAACCAACCTTCATTATGATATGTCAGATGCGGTGAATATTCTGACTCATACATCAGAGGTGATATTAACGAATGAGCAAAACTCTGCTATTTCAAAATTGAAAAAAGCACACAAGGCCCAAGATGAAAAAGAGCAGCATGCTCAAGACAAGAGAGAACAGAAAGAAGATAGGAAGAAGAGCCCTATTGAGATCAATGGAAAGATCTTTCCAGAAGAAACAAGAGAAAGAGGTGGTGGTGCCCTTTGGGACATCTTTCGGAGAGAGGATACAGAAAAGCTAGAAGCATATCTAAGAAAACACTCTAAAGAATTCAGACACACTTACTGTTCTCCAGTTGAACATGTTGTCCATCCAATTCTTGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGCTAAAGGAGGAATTTGGTGTAGAACCTTGGACATTTGAGCAGAAACTTGGAGAGGCAGTATTTATTCCTGCTGGATGTCCACATCAAGTAAGGAATCTCAAGTCATGCACAAAAGTTGCTGCAGACTTTGTGTCACCAGAAAACGTCCAATGGTGCATGCGTGTAACCGATGAGTTCCGACGACTTCCAAAGAATCACAAGGCCAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTCTATGCTGTTGACCAAGCTGTCAAGGAATTAGAAGCTTTAGTCAGTCCTTCTTGA 2610 0.4031 MNVGYQRQGKSSQHSGEKLDFRRCSNSFGIPQTQNQGWCYEKPNSGRDRCTLLRIKMTPALQRKVSVWLGEKSNQVTDSNPNKISRCSRDSEVSKKRKAQEAHKHHDNEKSKSVGKENVRGFSKSTSKLLPSRKGNEQKKCLKRKFEDKMLNNNLEQDALSKSRSKARKLDNVMMDNDKNSRKCHQCKKKERSAFVPCTQCQKMYCLRCIKQWYPAMSIADMAEMCPFCRKNCNCNICLRSRGTIKAHKTITDGEKVQHLQYMIYSLHPFMQKIHGEQSQEQEIEAKIQGKACSEIEIPPSACGVNERIYCDHCATSIIDLHRSCPKCSFEICLNCCKEIRNGSISPRSEVKFQYMNRGVDYMHGGYPLPASCELGTSEGHIKKFSKWSANGDGSVRCAPVELGGCGGSRLELKRVLPNGWISDLEAKARHILKTFCQIEQTNLQKEAVPSCNSMIRAAFRDGTNDNNIYCPVSSDLKKEGLCLFQKHWISGEPIIVRDVLKKGTGLSWEPMVTWRAICENFGSNRSEVKAIECLPSYEVEISTREFFKGYTEGRTYSNLWPEMLKLRDWPPSDKFDDVLPRHCDEFIRCLPFQEYCDPRAGILNLAARLPAQYLKPDLGPKSYIAYGTKEELGRGDSVTNLHYDMSDAVNILTHTSEVILTNEQNSAISKLKKAHKAQDEKEQHAQDKREQKEDRKKSPIEINGKIFPEETRERGGGALWDIFRREDTEKLEAYLRKHSKEFRHTYCSPVEHVVHPILDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAADFVSPENVQWCMRVTDEFRRLPKNHKAREDKLEIKKMIVYAVDQAVKELEALVSPS* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2454 869 ProSiteProfiles Zinc finger RING-type profile. 184 230 IPR001841 -
Lja6g2454 869 SMART cupin_9 580 832 IPR003347 -
Lja6g2454 869 MobiDBLite consensus disorder prediction 1 20 - -
Lja6g2454 869 CDD cupin_RmlC-like 749 804 - -
Lja6g2454 869 Gene3D Cupin 465 841 - -
Lja6g2454 869 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 179 252 IPR018866 -
Lja6g2454 869 MobiDBLite consensus disorder prediction 88 117 - -
Lja6g2454 869 MobiDBLite consensus disorder prediction 72 138 - -
Lja6g2454 869 Pfam JmjC domain, hydroxylase 717 815 IPR003347 -
Lja6g2454 869 SUPERFAMILY Clavaminate synthase-like 486 864 - -
Lja6g2454 869 MobiDBLite consensus disorder prediction 72 87 - -
Lja6g2454 869 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN PROTEIN 79 866 - -
Lja6g2454 869 MobiDBLite consensus disorder prediction 670 709 - -
Lja6g2454 869 ProSiteProfiles JmjC domain profile. 599 832 IPR003347 -
Lja6g2454 869 Coils Coil 675 695 - -
Lja6g2454 869 MobiDBLite consensus disorder prediction 118 132 - -
Lja6g2454 869 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 79 866 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2454 Lja-Chr6 53449339 53453693 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja6g2454 JmjC 1.2e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2454 K15601 - gmx:100801772 1126.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2454 6 53449339 53453693 Lja6g2454 6 53449339 53453693 ECH
Lja4g4282 4 76453587 76459039 Lja6g2454 6 53449339 53453693 PCT