Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2441 ATGGCCACTTCAACCACTCTCCTAGTACTACTCCTCTCATGGTTTCTACCAACACTGAATGCACATTCAGAAAAGGTACATGACCCTCTATCTGATAATTATATTCCAAGCTACATCCCCAAGAGTCAAGAAAATCAAAATGTGGTCATGAACACAATAGACTCTTGTTGGCGAGCCAAATCAAATTGGGCTTCAAACCGAAAATCATTAGCAGATTGTGCAATTGGTTTTGGCAAAGATGCTATTGGAGGCAAATTTGGAGAAATATATGAAGTAACTGACCCCTCTGATGACCCTGTGAGCCCAAAACCAGGCACACTTCGTTATGGTGTGGTCCAAACAGAGCCTCTCTGGATAATTTTTTCCAAGGACATGGTTATCAAGCTCAAGAATGAGCTCATTGTGAATAGCTACAAGACCATTGATGGGAGAGGTGCCAAGGTGGAGATTGCAAATGGCCCTTGCATTACAATACAAGGTGTGAGCCATGTCATTGTTCATGGAATTAGCATTCATGATTGTAAACCTGGTGAGGCAGCCATGGTTATGAGCAATGTTGACCATGTTGGGCACCGTGAAGGCTCTGATGGAGATGCCATTACTATATTTGCTTCCTCTAATGTCTGGATTGATCATTGCTTCTTTGCTCGTTGCGCTGATGGTCTCACCGATGTTACTCATGCCTCAACTGCTGTCACGATCTCAAACAATTACTTCACCCAGCACGACAAAGTGATGCTGCTGGGACATAATGATGAATACAGTGCAGATAGAATAATGAGGGTAACGGTAGCTTTCAACCGTTTTGGCAGTGGCCTAATTGAAAGAATGCCACGGGTAAGATTTGGTTATGCTCATGTAGTCAACAACCGGTATGATGAGTGGCTTATGTATGCTATTGGTGGCAGTGCTGACCCTACCATTTTCAGTGAAGGGAACTACTTTATAGCTTCAAATGATTCTGCTGCAAAACAGGTTACCAAGAGGGAAACTAGTGGAAAATGGAATAATTGGAAATGGAGGAGTTCCAAGGATGAATTCATAAATGGAGCTTATTTTGTGCCATCTGGGTATGGAAGTTGTACCCCAATGTATTCATCTGCTCAAAAATTTAATGCGGCCCAGCCATCCATGGTGCCTCTATTAACTCTCAATGCAGGACCACTGGATTGTAATGTTAACAAAGCATGCTAA 1194 0.4271 MATSTTLLVLLLSWFLPTLNAHSEKVHDPLSDNYIPSYIPKSQENQNVVMNTIDSCWRAKSNWASNRKSLADCAIGFGKDAIGGKFGEIYEVTDPSDDPVSPKPGTLRYGVVQTEPLWIIFSKDMVIKLKNELIVNSYKTIDGRGAKVEIANGPCITIQGVSHVIVHGISIHDCKPGEAAMVMSNVDHVGHREGSDGDAITIFASSNVWIDHCFFARCADGLTDVTHASTAVTISNNYFTQHDKVMLLGHNDEYSADRIMRVTVAFNRFGSGLIERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTIFSEGNYFIASNDSAAKQVTKRETSGKWNNWKWRSSKDEFINGAYFVPSGYGSCTPMYSSAQKFNAAQPSMVPLLTLNAGPLDCNVNKAC* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2441 397 Coils Coil 393 397 - -
Lja6g2441 397 PRINTS Pollen allergen Amb family signature 132 148 IPR018082 -
Lja6g2441 397 PRINTS Pollen allergen Amb family signature 196 217 IPR018082 -
Lja6g2441 397 PRINTS Pollen allergen Amb family signature 368 391 IPR018082 -
Lja6g2441 397 PRINTS Pollen allergen Amb family signature 73 90 IPR018082 -
Lja6g2441 397 PRINTS Pollen allergen Amb family signature 338 362 IPR018082 -
Lja6g2441 397 PRINTS Pollen allergen Amb family signature 96 121 IPR018082 -
Lja6g2441 397 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Lja6g2441 397 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Lja6g2441 397 SMART amb_all 124 321 IPR002022 -
Lja6g2441 397 SUPERFAMILY Pectin lyase-like 50 391 IPR011050 -
Lja6g2441 397 Pfam Pectate lyase 130 315 IPR002022 -
Lja6g2441 397 PANTHER PECTATE LYASE 18-RELATED 36 396 IPR045032 GO:0030570
Lja6g2441 397 Gene3D - 50 390 IPR012334 -
Lja6g2441 397 PANTHER PECTATE LYASE 16-RELATED 36 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2441 Lja-Chr6 53215864 53217353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2441 1 397 Polysaccharide Lyase AT4G22080 65.743 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2441 K01728 - gmx:100803229 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2441 6 53215864 53217353 Lja6g2441 6 53215864 53217353 ECH
Lja4g4279 4 76432857 76435076 Lja6g2441 6 53215864 53217353 PCT