Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2439 ATGGACAAAGGATGGGGTCTCACTCTTGATTCATCTTCCTCTCAATCCCTCCCTCTCTTTCCATCCAAACCTTCTGCATCTCTCATCAACACCATGTTCCCCATTCACGGATTCCCTGTCAATCTTACCCGCAACACCAACGATGAACAACACACCGCTGATGACAGCCGGAAAGTTGTCGGCGAAGTTGATTTCTTCTCTGATAGAAACAACTCATCGCCTCCTCCTGGCTATCTCGACCATCATCAACATGCTAAATCTAATATATCTGTTAAGAAGGAGATTCTCCCCGAAGAAAAACCTCCCAACGTTAATACTGGTTTGCAACTCCTAATTACTGGGAACACTGGGAGCGATCAATCAACGGTGGATGATGGTGTTTCATCAGATGTTGAAGATAAGAGAGCCAAGACCACTGAGCTTGCACAGTTACAATCGGAGCTTCAACGCATGAATTCAGAGAATAAGAAACTCAAAGAGATGCTCACCCATGTCAGCGGTAACTACACCGCTTTGCAGATGCATCTCACTGCATTAATGCAAAAGAACCACCGCACAGAAAATGAGGTTGTTGAGGGAAAATCTGAGGAGAAAAACCATGTTGCTGGTGGAGGAATGGTACCGAGACAGTTCATGGACATAGTAGGACCTAGTGGTACTACAGCTGAAGTAGAAGATCAAGTATCTAATTCTTCTTCTGATGAACGGACACGATCGGGTACACCTCATAACAATCATGTTGAAGCTGGAACAAGAGATTACGTGAGAAACAGTAATGGTAAAAATGAATTGGGCAGGGAAGAGAGCACAGATTCAGAGTCACAAGGGTGGAACGCCAACAACAAAGTTCAGAAACTGAACCCCTCTAATGCAGCTGTGGATCAGTCCACTGCTGAAGCCACCATGAGAAAAGCTCGCGTCTCAGTTCGTGCTCGATCAGAAGCTTCCATGATCAGTGATGGATGCCAATGGCGAAAGTATGGACAAAAAATGGCAAAAGGAAATCCATGTCCTCGAGCATATTACAGATGCACCATGGCAGTTGGTTGTCCAGTTCGCAAACAAGTTCAACGAAGTGCTGAGGACAGAACAATTTTGGTGACAACATATGAAGGCACACACAACCATCCACTGCCACCTGCTGCGGTGGCTATGGCTTCAACCACCGCTGCTGCAGCCAGCATGTTGCTGTCTGGGTCAATGACAAGTGGAGATGGGATAATGAACCCCAATTTGCTAGCTAGAGCTATTCTTCCTTGCTCTTCTACGAGCATGGCAACACTTTCAGCTTCAGCACCATTCCCTACCGTGACACTTGACCTCACACACAACCCGAACCCTTTGCAATTCTCAAGACCGCAACATTCTGCACCGTTCCAAATACCCCAGAATTTCATGTCCGGACCAGCCTCATTTGCACAAGCTGCACCGCTTTATAATCAGTCCAAATTCTCAGGTCTTCAATTGTCATCCCAGCAGGAAGTGGGTTCTTCACACCAATTGGCTTCTCAACAGCCACCACAACAACAGCCTTCACTAGCTGATACTGTTAGCGCCGCCACCGCAGCCATCACCGCCGACCCCAACTTCACCGCAGTACTTGCTGCCGCCATCTCCTCCATCATCGGTGGTTCTCATGCAAACAACAATGGCAGTCACAACAATAACAACAACAACAACAACAACAAGAGTACAATGAGCAATTTTTCAGGAAACTAG 1719 0.4677 MDKGWGLTLDSSSSQSLPLFPSKPSASLINTMFPIHGFPVNLTRNTNDEQHTADDSRKVVGEVDFFSDRNNSSPPPGYLDHHQHAKSNISVKKEILPEEKPPNVNTGLQLLITGNTGSDQSTVDDGVSSDVEDKRAKTTELAQLQSELQRMNSENKKLKEMLTHVSGNYTALQMHLTALMQKNHRTENEVVEGKSEEKNHVAGGGMVPRQFMDIVGPSGTTAEVEDQVSNSSSDERTRSGTPHNNHVEAGTRDYVRNSNGKNELGREESTDSESQGWNANNKVQKLNPSNAAVDQSTAEATMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRSAEDRTILVTTYEGTHNHPLPPAAVAMASTTAAAASMLLSGSMTSGDGIMNPNLLARAILPCSSTSMATLSASAPFPTVTLDLTHNPNPLQFSRPQHSAPFQIPQNFMSGPASFAQAAPLYNQSKFSGLQLSSQQEVGSSHQLASQQPPQQQPSLADTVSAATAAITADPNFTAVLAAAISSIIGGSHANNNGSHNNNNNNNNNKSTMSNFSGN* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2439 572 MobiDBLite consensus disorder prediction 115 135 - -
Lja6g2439 572 SUPERFAMILY WRKY DNA-binding domain 311 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g2439 572 Pfam WRKY DNA -binding domain 320 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g2439 572 MobiDBLite consensus disorder prediction 222 258 - -
Lja6g2439 572 MobiDBLite consensus disorder prediction 191 299 - -
Lja6g2439 572 Gene3D WRKY domain 303 380 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g2439 572 Coils Coil 134 161 - -
Lja6g2439 572 PANTHER WRKY TRANSCRIPTION FACTOR 31-RELATED 53 563 - -
Lja6g2439 572 SMART WRKY_cls 318 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g2439 572 MobiDBLite consensus disorder prediction 271 297 - -
Lja6g2439 572 ProSiteProfiles WRKY domain profile. 313 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g2439 572 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 53 563 IPR044810 GO:0003700
Lja6g2439 572 MobiDBLite consensus disorder prediction 7 21 - -
Lja6g2439 572 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g2439 572 MobiDBLite consensus disorder prediction 549 572 - -
Lja6g2439 572 MobiDBLite consensus disorder prediction 490 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2439 Lja-Chr6 53201051 53203714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2439 1 557 WRKY Transcription Factor Family AT1G62300 52.554 3.76e-163 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja6g2439 WRKY 2.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2439 - - gmx:100802124 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2439 6 53201051 53203714 Lja6g2439 6 53201051 53203714 ECH
Lja3g1059 3 10976846 10980364 Lja6g2439 6 53201051 53203714 ECH