Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2437 ATGGCCTGGACAAGAGGCAAAACCCTCGGTCGCGGCTCCACCGCGGCCGTTAACATAGCTGAGGATCGCCGGACCGGTGAATTATTCGCTGTGAAATCAGCGGAGCTTCACCGGTCAGAGTTCCTCAAGAGGGAACAGGGAATTCTCTCTACTTTAAGGTGTCCTCAGATCGTGGCCTACAAAGGCTGCGATGTCACATTTGAGAACGGTGCTAACTGGTTTAACCTCTTCATGGAGTACGCGCCTCAAGGGACTGTAACTGATGCAATCAACAAGCATGGTGGTGGAATTGAAGAAGCTATGGCGGGGTTTTACACGCGCCAAATTCTGCTTGGGTTGGAGTACCTTCATTCAAATGGGATAGTGCATTGTGACGTGAAGGGGCAGAACGTGCTGGTAACGGAGAGTGGTGCAAAAATTGCTGACTTGGGTTGTTCTAAAAGGGTCGGAGAGTCTGTGATCACGGGGACGCCTGCGTTCATGGCGCCAGAGGTGGCGCGTGGGGAGCAGCAGGGGTTCCCTGCTGATGTTTGGGCTCTGGGGTGTACTGTGTTGGAGATGATCACGGGAAAACCGCCGTGGCGAGGTGTTTCTGACCCGGCAGCGGCGATGTACCGGATCGGATTCTCCGGTGAGGTGCCGGAGATTCCAAGCTCTGTTTCGGAGCAGGGGAAGGATTTCTTGAGCAAGTGCTTGAAGAGGGATCCCGATGAGAGGTGGTCGGTGGAGGAGCTTCTTGGACACGGATTCGTTGGAGAGAAGAACAAGGAACTAGCATTGGATTCGGACACTCCCATGAGTGTGTTGGAGAGAAGCTTTTGGGACACGCTGGATACGACTCAGGGTCCCACTTCTGATTCTTTTTCCTCGGATTCCTCGAGCTCTCGAGACAGGATTAGGATGTTGGTTTCAGATGAGCCTGTTTGGGAATGGGATGATGATCAATGGATCACGGTGAGAAGCAATGACAAGGAGCTGGATGCGTGCTCTGTTCAGGGAACAGAGAGAACAGAGTCCTCTGTTCTGGGAACAGAGGATTTTGGATCATACACTGTTTGTGTCCTTGGTGATCAAGAGAATGGTTTGGAAATTTTTTATGAACCAAAAATTGTAGTTGACATTGTCACTGAATTTAGTACATGGAATGTCATTGTTGATATGATTGTTACCTTAGTAGCAGCAACTGTGGCTGCATCAATTAAGAATTGTAACCATTGTCTCCATATTATGAGGTTGTTTCACATGGAAAATTTGATTTTAAGAACAATGAAGTTTTTACCAATGCACCGTGTTCTTCTCCCTCTCTTTCCATCTCTAGTTCACTTTGGATGA 1332 0.491 MAWTRGKTLGRGSTAAVNIAEDRRTGELFAVKSAELHRSEFLKREQGILSTLRCPQIVAYKGCDVTFENGANWFNLFMEYAPQGTVTDAINKHGGGIEEAMAGFYTRQILLGLEYLHSNGIVHCDVKGQNVLVTESGAKIADLGCSKRVGESVITGTPAFMAPEVARGEQQGFPADVWALGCTVLEMITGKPPWRGVSDPAAAMYRIGFSGEVPEIPSSVSEQGKDFLSKCLKRDPDERWSVEELLGHGFVGEKNKELALDSDTPMSVLERSFWDTLDTTQGPTSDSFSSDSSSSRDRIRMLVSDEPVWEWDDDQWITVRSNDKELDACSVQGTERTESSVLGTEDFGSYTVCVLGDQENGLEIFYEPKIVVDIVTEFSTWNVIVDMIVTLVAATVAASIKNCNHCLHIMRLFHMENLILRTMKFLPMHRVLLPLFPSLVHFG* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2437 443 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Lja6g2437 443 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2437 443 PANTHER MAP KINASE KINASE KINASE 1 345 - -
Lja6g2437 443 Gene3D Transferase(Phosphotransferase) domain 1 2 306 - -
Lja6g2437 443 CDD STKc_MAPKKK 3 251 - -
Lja6g2437 443 Pfam Protein kinase domain 4 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2437 443 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2437 443 SUPERFAMILY Protein kinase-like (PK-like) 3 293 IPR011009 -
Lja6g2437 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Lja6g2437 443 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2437 Lja-Chr6 53182211 53183628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2437 1 322 MAP Kinase Kinase Kinase AT1G05100 51.734 1.32e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja6g2437 Pkinase 1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2437 K20716 - gmx:100802174 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2437 6 53182211 53183628 Lja6g2437 6 53182211 53183628 ECH
Lja3g1060 3 11006484 11009183 Lja6g2437 6 53182211 53183628 ECH