Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2426 ATGAATGCTCAAGCTGAGTACTCTTTCAAACTGTCCCCAACTCAAACTGGGTCTTCTTCTTCCACTTCTTCTCTTGTTAGCAGTGTGGTTGATAACCCTTCTCATCAGCTTCCTGAGATAAGCCTGAAAACACCAATGGTTAGGCCTTATGTTCGATCAAAAATGCCTCGCCTTCGTTGGACTCCAGATCTCCACCGTTGCTTCGTGCATGCAGTTCAAAGGCTAGGAGGAGAAGACAGGGCCACACCAAAGTTGATTTTGCAGATAATGAATGTAAAGGGGCTTACAATATCTCATGTTAAAAGTCACCTTCAGATGTACAGGAGCATGAAGCAGGAGCAGTTGAGTCAAGCAGCAAGGAAGAAGGATATGGCACCTGCAGATTTCTCCTTCCGACAGAATCCTCTTCACCTGAGGACTAGTGGAGCTCCTCAACGTACGGAAGAGCATTCCAGCACACAACCTCATCAAAGGAGTCCTTATGAGAAGGAATCTTACCATGGAAACCAAGGGAGTGAACCAATTATAATTTGTAAAGGCGATGAACAGAAGAAGACGCACTCGTACATCAGCTTTGAGGATCTTTTCAGAAGCCACACCACTGTCCAGGAGAGCACAAATCCTCCCGAAATGGTGTCACTAGGAGGTGCCTGTTACAAAAGCAACCAACAAAGATTCGAAGATGTAAACAAGATAGGAGAGAGAGCGGATGAAGACAGACTTTCCCTGTCATTGAACTCAAGAGGTTTTCATCCATTATTCTCCAACCGGAGCGATCCAAGTCCAGACAAAAATGATGTCTCTCTTGAGCTCACGCTCGCTTAG 825 0.4558 MNAQAEYSFKLSPTQTGSSSSTSSLVSSVVDNPSHQLPEISLKTPMVRPYVRSKMPRLRWTPDLHRCFVHAVQRLGGEDRATPKLILQIMNVKGLTISHVKSHLQMYRSMKQEQLSQAARKKDMAPADFSFRQNPLHLRTSGAPQRTEEHSSTQPHQRSPYEKESYHGNQGSEPIIICKGDEQKKTHSYISFEDLFRSHTTVQESTNPPEMVSLGGACYKSNQQRFEDVNKIGERADEDRLSLSLNSRGFHPLFSNRSDPSPDKNDVSLELTLA* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2426 274 MobiDBLite consensus disorder prediction 1 30 - -
Lja6g2426 274 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 56 110 IPR006447 GO:0003677
Lja6g2426 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 17 251 IPR044848 GO:0003700
Lja6g2426 274 MobiDBLite consensus disorder prediction 134 150 - -
Lja6g2426 274 Gene3D - 55 112 - -
Lja6g2426 274 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 17 251 - -
Lja6g2426 274 MobiDBLite consensus disorder prediction 112 174 - -
Lja6g2426 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 112 IPR017930 -
Lja6g2426 274 Pfam Myb-like DNA-binding domain 58 108 IPR001005 -
Lja6g2426 274 MobiDBLite consensus disorder prediction 249 274 - -
Lja6g2426 274 SUPERFAMILY Homeodomain-like 54 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2426 Lja-Chr6 53114894 53117838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2426 47 113 G2-like Transcription Factor Family AT2G42660 77.612 1.10e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja6g2426 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2426 - - gmx:100798980 266.159