Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2414 ATGTCTTGCTCCAACCTCACCATGTTGGTGTCTTCCAAGCCTTCTTCTCTATCTGATGCCTCTAACCTCTCCTTCCGTTCTATCCACCTCAACCCTTTTCAGCTCCCTTCACAAAACTCACCCCCTTCACGCATCTCTGTTTCCCCTGTTCAGTGTGGCCTCAGAGAGCTCAGAACCCGTATAGAATCCGTGAAGAACACCCAGAAAATCACAGAGGCAATGAAGCTTGTGGCTGCTGCAAAAGTCAGAAGAGCTCAAGAAGCTGTTGTCAATGGAAGACCCTTCTCAGAGACCCTCGTTGAAGTCCTCTACAGCATCAACGAGCAGCTCCAAACTGAAGATGTCGACGTCCCTCTCACCAAGATCAGGCCTGTGAAGAAGGTTGCCCTGGTCGTCTGCACAGGAGATCGTGGACTCTGCGGTGGATTCAACAACTTCATCTTGAAGAAAGCGGAGGCCAGAATCAAAGAGTTGAAGGAACTTGGTCTCGAGTACACCATCATCAGTGTCGGCAAAAAGGGTAACTCTTACTTCATTCGTAGACCTTACATTCCAGTTGATAGATTTCTTGAAGGTGGCACGCTTCCCACTGCCAAAGAGGCTCAAGCTATTGCAGATGATGTTTTCTCACTGTTTGTGAGTGAGGAGGTTGATAAGGTTGAGCTCTTGTACACAAAGTTTGTGTCGTTGGTGAAATCGGACCCTGTGATTCATACTCTGCTTCCTCTGTCACCGAAGGGAGAAATCTGTGACATCAATGGGAACTGTGTGGATGCTGCTGAGGATGAGTTGTTCAGGTTGACAACCAAGGAAGGGAAGTTGACTGTGGAGAGAGATACCATTAGGACTAAAACTGCAGATTTCTCACCGATTTTGCAGTTTGAGCAGGACCCTGTTCAGATCCTTGATGCTCTGCTTCCTCTGTATTTGAACAGTCAAGTGTTGAGGGCGTTGCAGGAGTCACTGGCGAGTGAGCTTGCTGCGCGAATGAGCGCGATGAGTAATGCGAGTGATAATGCTAGTGACTTGAAGAAGAGCTTGTCAACTGTGTATAACAGGCAGCGTCAGGCGAAGATCACAGGAGAAATTCTGGAAATTGTTGCTGGTGCTAATGCTCTTGAATAG 1125 0.4791 MSCSNLTMLVSSKPSSLSDASNLSFRSIHLNPFQLPSQNSPPSRISVSPVQCGLRELRTRIESVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYSINEQLQTEDVDVPLTKIRPVKKVALVVCTGDRGLCGGFNNFILKKAEARIKELKELGLEYTIISVGKKGNSYFIRRPYIPVDRFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGNCVDAAEDELFRLTTKEGKLTVERDTIRTKTADFSPILQFEQDPVQILDALLPLYLNSQVLRALQESLASELAARMSAMSNASDNASDLKKSLSTVYNRQRQAKITGEILEIVAGANALE* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2414 374 Pfam ATP synthase 54 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g2414 374 Gene3D - 121 244 - -
Lja6g2414 374 CDD F1-ATPase_gamma 54 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g2414 374 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 53 373 IPR035968 GO:0015986|GO:0045261|GO:0046933
Lja6g2414 374 Hamap ATP synthase gamma chain [atpG]. 51 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g2414 374 ProSitePatterns ATP synthase gamma subunit signature. 359 372 IPR023632 -
Lja6g2414 374 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 373 - -
Lja6g2414 374 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 373 - -
Lja6g2414 374 Gene3D ATP synthase, gamma subunit, helix hairpin domain 52 120 - -
Lja6g2414 374 PRINTS ATP synthase gamma subunit signature 351 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g2414 374 PRINTS ATP synthase gamma subunit signature 218 235 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g2414 374 PRINTS ATP synthase gamma subunit signature 320 339 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g2414 374 PRINTS ATP synthase gamma subunit signature 125 144 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g2414 374 Coils Coil 370 374 - -
Lja6g2414 374 PANTHER ATP SYNTHASE GAMMA CHAIN 1 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g2414 374 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 53 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2414 Lja-Chr6 52993374 52995260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2414 24 373 Primary Pumps ATPases AT1G15700 68.272 9.05e-177 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2414 K02115 - gmx:100037480 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2414 6 52993374 52995260 Lja6g2414 6 52993374 52995260 ECH
Lja6g1391 6 39270012 39272272 Lja6g2414 6 52993374 52995260 ECH