Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2406 ATGATGCAACCAGGACACGGCATGGCTCCACCCACCATGGTGCAGCAGCAACCGGCGCAGCAGTACCAACAGCCGCCGCCTCTGCAGCCGCAGCAACCGCCTTACGCCATGATGCCTCCCCAGGCTCAAGCGCCGCCGCCTCACATGTGGGCCCCCAACGTCCAGACTCCGCAACAGCAGCCCGCTACCGCTGAGGAGGTCCGCACTCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAGAATTACCTCTACACCTGCTTCGCTCACACCGGCGAGGTGACGACTGTGAAGGTGATTAGGAACAAGCAAACTTCTCAGTCGGAGGGTTATGGGTTTATAGAGTTTAACAGTCGTGCTGCTGCTGAGAGAGTGCTGCAGACGTTCAACGGGGCGATTATGCCGAACGGTGGACAGAATTTTAGGTTGAACTGGGCTTCTCTCAGTGCTGGCGAGAAGCGCCATGATGATACTCCTGATTATACTATTTTTGTTGGTGATTTGGCTGCGGATGTTACTGATTATCTCCTTCAGGAGACATTTAGAGCTCGTTATAACTCGGTGAAGGGGGCTAAGGTTGTTATTGATAGGCTCTCTGGTAGGACTAAGGGTTATGGTTTTGTGAGGTTTGCTGATGACAGTGAGCAAGTGAGAGCTATGACTGAGATGCAAGGGGTTCTGTGCTCGACAAGACCAATGAGGATTGGTCCAGCCGCTACTAAAACCCCTGCCACCAATCAGGGTCAGCCGAGAGCTTCCTATCAGAACCACCCTCAAGGCTCACAAAACGAGAATGATCCATCTAATACAACTATTTTTGTTGGCAACTTGGATCCTAATGTCAATGATGATCATTTGAGGCAAGTTTTCAGCCCATACGGAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGTGGATTTGTCCAATTTGCAGATAGGAGCGGTGCTGAAGAGGCACTACGGGTTTTAAATGGAACACTGTTGGGTGGGCAAAATGTCCGTCTGTCATGGGGACGCAGTCCTTCTAACAAACAGGCTCAGCCAGATTCAAACCAGTACGCGGCTGCTGGTGGATATTATGGATATGGTCAGGGATATGAAAATTATGGTTATGCTCCTTCTGGTCAGGATCCCAATGCGTATGGCAGTTATCCAGGGTATGCGAATTACCAACCACAGCAGCAACAGCCACAGCAAATGGGATATAGTTGA 1218 0.5074 MMQPGHGMAPPTMVQQQPAQQYQQPPPLQPQQPPYAMMPPQAQAPPPHMWAPNVQTPQQQPATAEEVRTLWIGDLQYWMDENYLYTCFAHTGEVTTVKVIRNKQTSQSEGYGFIEFNSRAAAERVLQTFNGAIMPNGGQNFRLNWASLSAGEKRHDDTPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLSGRTKGYGFVRFADDSEQVRAMTEMQGVLCSTRPMRIGPAATKTPATNQGQPRASYQNHPQGSQNENDPSNTTIFVGNLDPNVNDDHLRQVFSPYGELVHVKIPAGKRCGFVQFADRSGAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDSNQYAAAGGYYGYGQGYENYGYAPSGQDPNAYGSYPGYANYQPQQQQPQQMGYS* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2406 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 240 IPR000504 GO:0003723
Lja6g2406 405 MobiDBLite consensus disorder prediction 23 46 - -
Lja6g2406 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 16 400 - -
Lja6g2406 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 148 IPR000504 GO:0003723
Lja6g2406 405 SUPERFAMILY RNA-binding domain, RBD 253 368 IPR035979 GO:0003676
Lja6g2406 405 Gene3D - 9 151 IPR012677 -
Lja6g2406 405 MobiDBLite consensus disorder prediction 388 405 - -
Lja6g2406 405 CDD RRM2_SECp43_like 160 239 - -
Lja6g2406 405 SUPERFAMILY RNA-binding domain, RBD 40 147 IPR035979 GO:0003676
Lja6g2406 405 Gene3D - 249 353 IPR012677 -
Lja6g2406 405 MobiDBLite consensus disorder prediction 235 271 - -
Lja6g2406 405 SUPERFAMILY RNA-binding domain, RBD 152 261 IPR035979 GO:0003676
Lja6g2406 405 SMART rrm1_1 69 144 IPR000504 GO:0003723
Lja6g2406 405 SMART rrm1_1 162 236 IPR000504 GO:0003723
Lja6g2406 405 SMART rrm1_1 271 338 IPR000504 GO:0003723
Lja6g2406 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 342 IPR000504 GO:0003723
Lja6g2406 405 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 16 400 - -
Lja6g2406 405 MobiDBLite consensus disorder prediction 1 46 - -
Lja6g2406 405 CDD RRM1_SECp43_like 69 147 - -
Lja6g2406 405 Gene3D - 152 248 IPR012677 -
Lja6g2406 405 MobiDBLite consensus disorder prediction 240 271 - -
Lja6g2406 405 MobiDBLite consensus disorder prediction 373 405 - -
Lja6g2406 405 CDD RRM3_NGR1_NAM8_like 269 340 - -
Lja6g2406 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 226 IPR000504 GO:0003723
Lja6g2406 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 335 IPR000504 GO:0003723
Lja6g2406 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 135 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2406 Lja-Chr6 52922167 52925678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2406 67 349 Eukaryotic Initiation Factors Gene Family AT2G23350 27.083 5.49e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2406 - - gmx:100801562 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2406 6 52922167 52925678 Lja6g2406 6 52922167 52925678 ECH
Lja4g4243 4 75965085 75969376 Lja6g2406 6 52922167 52925678 PCT