Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2399 ATGAGGTGTTTCACATGCTGCAAGTCAGACATTGAAACACCCTCTTTCAGGAAAGTTTCCAAAGGCAGAAGAACATTCAAATCAATTGCAGCTGCTATGTCACTCAAATCAGGTAGCAGCAGGCATAGACAAATCAATGAAGAGATATTAAAATATGGAGCTGCAAAAAACGACATTAACATATTCACATATGAAGATCTGGTTGATGCAACAAACAACTTCAGTCCTGATTGTCTGGTGGGAGAAGGTGGATTTGGGAATGTCTATAAAGGATACATAAAGAGCATTGATCAGACTGTAGCGGTTAAGCAACTGAACAGGGAAGGAGCTCAAGGAACAAGAGAATTTTTCGCAGAGGTTTTGATGTTAAGCATGGTGAACCACCCAAACCTTGTTAGGCTCGTTGGTTATTGTGCAGAAGGTGATCAAAGGGTTTTAGTCTATGAATACATGGCCAATGGAAGCTTAGAAAGTCATCTTCTAGAGTTAGGTGAAGATATGGAGCCTTTGGATTGGCATACAAGGATGAAAATTGCTGAGGGAGCAGCTAGAGGACTTGAATATCTGCATGACAGTGCAGACCCCCCAGTGATATTCCGTGATTTCAAGTCGTCAAATATACTTTTAGATGAAGATTTCAACCCAAAGCTCTCTGATTTTGGACTTGCAAAGATTGCTCCAGCAGAGGGGTTCCAGAACCATGTCTCAACCAGGGTGATGGGGACCTATGGCTACTGTGCACCAGAGTATGCTGCAACAGGTCAATTAACATCAAAATCAGATATTTATAGTTTTGGGGTTGTGTTCTTGGAAATAATCACTGGTAGGAGAGTAATTGACACTGCAAGAGTTACAGAAGAACAAAACTTGATTGACTGGGCACAACCTCTATTCAAGGACAGAACAAAGTTCAGTCTAATGGCTGATCCTTTGCTCAAAGGCCGGTTCCCTGTGAAAGGTTTATTTCAAGCCCTTGCAGTTGCAGCAATGTGTTTACAAGAGGAAGCTGACACACGACCTTACATGGATGATGTTGTAACTGCCCTTGCTCATCTAGCAGAGCAGAGAACTGAAGAGAAAGACATTGCTGGTGAATCTATAAAAAGTGCTGGCCATGTTGAATCCTTTAGAGGTGCAAGTTCAATGGCATCCGAAAGGGCGTAG 1164 0.4227 MRCFTCCKSDIETPSFRKVSKGRRTFKSIAAAMSLKSGSSRHRQINEEILKYGAAKNDINIFTYEDLVDATNNFSPDCLVGEGGFGNVYKGYIKSIDQTVAVKQLNREGAQGTREFFAEVLMLSMVNHPNLVRLVGYCAEGDQRVLVYEYMANGSLESHLLELGEDMEPLDWHTRMKIAEGAARGLEYLHDSADPPVIFRDFKSSNILLDEDFNPKLSDFGLAKIAPAEGFQNHVSTRVMGTYGYCAPEYAATGQLTSKSDIYSFGVVFLEIITGRRVIDTARVTEEQNLIDWAQPLFKDRTKFSLMADPLLKGRFPVKGLFQALAVAAMCLQEEADTRPYMDDVVTALAHLAEQRTEEKDIAGESIKSAGHVESFRGASSMASERA* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2399 387 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Lja6g2399 387 CDD STKc_IRAK 80 349 - -
Lja6g2399 387 ProSiteProfiles Protein kinase domain profile. 74 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2399 387 PANTHER OS07G0668900 PROTEIN 1 385 - -
Lja6g2399 387 SUPERFAMILY Protein kinase-like (PK-like) 59 347 IPR011009 -
Lja6g2399 387 Gene3D Transferase(Phosphotransferase) domain 1 151 374 - -
Lja6g2399 387 MobiDBLite consensus disorder prediction 360 387 - -
Lja6g2399 387 Pfam Protein kinase domain 79 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2399 387 Gene3D Phosphorylase Kinase; domain 1 33 150 - -
Lja6g2399 387 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2399 Lja-Chr6 52896417 52899346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2399 1 353 Glycoside Hydrolase AT3G07070 56.704 1.24e-143 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lja6g2399 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2399 - - gmx:100305361 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2399 6 52896417 52899346 Lja6g2399 6 52896417 52899346 ECH