Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2394 ATGGATGAAAAGCATTCTGAGCCAGAGCAACCAGAAGGAGGGGAACACACTCCAGCACAAGAAGCTAATATCACAAACCAAATAGCAGCACCAACCCAGATAGCTGGTGGTTCATCCTCTTCATGCTACCCGATTGGGCAACTCTATCCTCACCAACACAACCACCAGCAAGCATTGCAGAGTCAACTGCAGAACTTTTGGAAAGCCCAGTTTGAGGAAATTGAGAACATTGAGAAGACCACTAAATTCAACCATGCATTGCCTCTGGCGAGGATCAAGAAGGTCATGAAAGCTGGTGAAGGTGTGAAAATGGTAGCAGGCGAGGCTCCTGTTCTGTTCGCCAAGGCGTGCGAGATGTTCATTATGGAGCTAACAATGAGGTCTTGGGTGAATGCTGAGGAGAACAAGAGGAGGACCCTTAAGAAGAGTGACATTGCATCTGCAATCTCTGGGACTGATTTATATGATTTTCTCGTTGATGTTGTTCCTAAGGGTGAGACACTGGAGCGTGAAGTGCATGTTGAAATTCCGCCAAGAAGGGGAAATGTTGCTGAGGTTGTTCAGAATGTTCCAGTTGTTCAGAACGTTCCTCCTCCTCATCCTTACTATTATGTGCCATCACCAGCTCAATATTTTGCTGCTGGAGGTCCATCACATGGTGTGATTCCTCCAAGTATGGTTATGGCAAGGCCACCTTTTAATCATCCAATTTATGGACAGCAACCACCATATCCTTATGGTCTTCAAGTAGTGTATCCAGCCCCAAAATGTCTGATGATGAAAAACTCTCCAGATTCCGATGATCAGGACGACAAATCTACTGCAGGAAGTGCCTGA 837 0.46 MDEKHSEPEQPEGGEHTPAQEANITNQIAAPTQIAGGSSSSCYPIGQLYPHQHNHQQALQSQLQNFWKAQFEEIENIEKTTKFNHALPLARIKKVMKAGEGVKMVAGEAPVLFAKACEMFIMELTMRSWVNAEENKRRTLKKSDIASAISGTDLYDFLVDVVPKGETLEREVHVEIPPRRGNVAEVVQNVPVVQNVPPPHPYYYVPSPAQYFAAGGPSHGVIPPSMVMARPPFNHPIYGQQPPYPYGLQVVYPAPKCLMMKNSPDSDDQDDKSTAGSA* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2394 278 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 25 207 - -
Lja6g2394 278 SUPERFAMILY Histone-fold 50 158 IPR009072 GO:0046982
Lja6g2394 278 Pfam Core histone H2A/H2B/H3/H4 39 149 IPR007125 GO:0003677
Lja6g2394 278 MobiDBLite consensus disorder prediction 1 28 - -
Lja6g2394 278 Gene3D Histone, subunit A 47 164 IPR009072 GO:0046982
Lja6g2394 278 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 25 207 - -
Lja6g2394 278 MobiDBLite consensus disorder prediction 259 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2394 Lja-Chr6 52854362 52855198 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2394 66 246 CCAAT-HAP5 Transcription Factor Family AT1G08970 50.270 5.28e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lja6g2394 Histone 7.4e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2394 K08066 - fve:101311753 187.193