Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2392 ATGGCTAATCTCACCTCCTTCTCTTCATCTTTCGTCGACGACGACTCTTCCGAGGACTCCTGCAGTATCTGTCTAGAGTCCTTCAACGTCCATGATCCATCCACTGTTACCTGTTGCAAACATGAATATCATCTGCATTGCATTCTTGAATGGTCTCAAAGAAGCAAGGAATGTCCAATATGTTGGCAATCACTTGCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAACGCTTAAGATCAAGAAATGTAAATTCATCTTCATTCGCTAATTCTCGACTTAATGATGGTCATGATGGTTCTTACTCAGAAGAATGTGATTTTGATGAACAAATTATGCAGCACCTAGTTGCTGCTGCAAGTAGGGCTCGTTTTGTTCACAGACAGGAAAGGCGGGGATCGGCGGGAGCAGGTCCGTCTGCGAACTCTTCTGTGCATGTTCGTCGAGAGCAACCGACCCCTACAACAACTTCGCTATCTCAGGGTAGTTCACCAACTTCTGGTGTACCATCAAATGTGAACAATCAACCTCCAACACCTGTTGTTGATGAGGTTGCTAGAAATACTAGTCCTCAAACTGATGTTCCTTTCAGAGCCAGAGTTATCTATAGCCAGACACCACCTGAGAGTGCGAGGAGACTAAACACTCCGGAGATGTTCTCCTTCCCTGAATCCATCAAATCCAAATTTTCTGCTGCTTCAGCCAAATACAAGGAATCAATTTCAAAAGGTACCCGTGGCCTCAAAGAGAAGTTACTTGCCCGTAATGCATCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGCGAGATGAATGCAGGAATAGCTGGTGTTGCACGGATGATTGAACGCCTCGATCTTTCCTCTAAAAGGTCCGCTGCTCTATTTCCTGACCGTACAGGGGAAACTTCAGGCTTTCCTGAAGAAGTAAAGTCTGTCAAAGAGCATTCTCCTAGTGAAGATAACGAAGATGTGGTTCATCATGTTACTTCAGATGCTCCCTCACTCATCTCTAACATGGTTCCTGCTCGAGTGGAAATTGCTCCACATGTTCAGAGTGGACAGGGTGCATTGAAGACTTAG 1098 0.4545 MANLTSFSSSFVDDDSSEDSCSICLESFNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKRLRSRNVNSSSFANSRLNDGHDGSYSEECDFDEQIMQHLVAAASRARFVHRQERRGSAGAGPSANSSVHVRREQPTPTTTSLSQGSSPTSGVPSNVNNQPPTPVVDEVARNTSPQTDVPFRARVIYSQTPPESARRLNTPEMFSFPESIKSKFSAASAKYKESISKGTRGLKEKLLARNASVKELSKGVQREMNAGIAGVARMIERLDLSSKRSAALFPDRTGETSGFPEEVKSVKEHSPSEDNEDVVHHVTSDAPSLISNMVPARVEIAPHVQSGQGALKT* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2392 365 MobiDBLite consensus disorder prediction 301 329 - -
Lja6g2392 365 MobiDBLite consensus disorder prediction 142 196 - -
Lja6g2392 365 ProSiteProfiles Zinc finger RING-type profile. 21 61 IPR001841 -
Lja6g2392 365 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 8 351 - -
Lja6g2392 365 SUPERFAMILY RING/U-box 16 68 - -
Lja6g2392 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 93 IPR013083 -
Lja6g2392 365 MobiDBLite consensus disorder prediction 309 329 - -
Lja6g2392 365 MobiDBLite consensus disorder prediction 134 196 - -
Lja6g2392 365 Pfam Ring finger domain 19 61 IPR001841 -
Lja6g2392 365 SMART ring_2 21 61 IPR001841 -
Lja6g2392 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 8 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2392 Lja-Chr6 52821714 52824389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2392 15 69 C3H Transcription Factor Family AT4G00335 47.273 2.26e-13 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2392 6 52821714 52824389 Lja6g2392 6 52821714 52824389 ECH