Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2385 ATGGATGAAAATCAACCGGAGCCAGAGCAGCTAGAAGGAGGGGAAGACACTCCAGCACAAGAAGCCAATGTCATGCACCAAAGCCAACCTAACCAAATGACAACACACACTCAAATAGTTGGTGGTTCTTCCTCCTCATGCTACCGAAGAGGGCAACTCTACCTGCACCAACACATCCACCGACTCCAACAACAACAGCTGCGAAGACGACTTAACAACTTCTGGGAAACTAAGTGCAAGGAAATTGAGAACCCCATTGATTTTAACCATGCATTTCCTCTGGCGAGGATTAAGAAGATCATGAAAGCTGATCCCAATGTGAATAGTGTAGCAGCTGATGCTCCTGTTCTTTTCTCCAAGGTGTGCGAGATGTTCATTATGGACCTGACAATGAGGGCTTGGATGAATGCAGAGGAGAACAAACGGAGGACTCTTCAGACAAGTGACATCGCATCTGCAATCTCAAGGACTGAAGTGTTCGATTTTCTTGTTGGCATTGTTCCCAAGGATGAGAAAATGGAGCATGATGTGTATGCTGGGATTCCACCAAGAACAGGCAATGATGTTGAGGTAGTTCAAAATGTTCCTCCTCCTCTTGGTACTACTCATCCTTACTATGCTGAGGTTGTTCAGAATGTTCCGGGTGTTCAAAATGTTCCTCCTCCTCTTGGTACTCCTCATCCTTACTATGCTGAGGTTGTTCAGAATGTTCCAGCTGTTCAAAATGTTCCTCCTCCTCTTGGTACTCCTCATCCTTACTACTATGTGCCAGCACCTCCTCCTCATCATTTTGGTTCTGCAATTCCTCCAAGAATGGTTATGGCAAGGCCTCCTTTTGATCATCCTATATACAGGCAGCAACCACCCTATCCTTATGCTCCTCAAGCATTGCAGTATGCAGCCCCAAAACATCTGATGATTGAAAACTCTCCAGATTCAGATGAGACCAAAAAGTAG 957 0.4545 MDENQPEPEQLEGGEDTPAQEANVMHQSQPNQMTTHTQIVGGSSSSCYRRGQLYLHQHIHRLQQQQLRRRLNNFWETKCKEIENPIDFNHAFPLARIKKIMKADPNVNSVAADAPVLFSKVCEMFIMDLTMRAWMNAEENKRRTLQTSDIASAISRTEVFDFLVGIVPKDEKMEHDVYAGIPPRTGNDVEVVQNVPPPLGTTHPYYAEVVQNVPGVQNVPPPLGTPHPYYAEVVQNVPAVQNVPPPLGTPHPYYYVPAPPPHHFGSAIPPRMVMARPPFDHPIYRQQPPYPYAPQALQYAAPKHLMIENSPDSDETKK* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2385 318 SUPERFAMILY Histone-fold 26 163 IPR009072 GO:0046982
Lja6g2385 318 Gene3D Histone, subunit A 54 169 IPR009072 GO:0046982
Lja6g2385 318 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 18 217 - -
Lja6g2385 318 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 18 217 - -
Lja6g2385 318 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 92 154 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2385 Lja-Chr6 52792208 52793164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2385 71 174 CCAAT-HAP5 Transcription Factor Family AT1G56170 63.810 3.88e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lja6g2385 CBFD_NFYB_HMF 8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2385 K08066 - qsu:112026379 153.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2385 6 52792208 52793164 Lja6g2385 6 52792208 52793164 ECH