Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2384 ATGGATGAAAAGCAACCTGAGCCAAAGCAACCAGAAGAAGGACAAGACACTCCAACACAAGAAGCTAATGTTATGGACCAAAACAAACCCAACCCATTCATGACAACAAACACTCAAATAGCTGGTGGTTCTTCCTCTTCATGCTACCCAAGAGGGCAACTCTACCCTCACCAACAAATCCACCAGCTCCAACAACAACATCTGGAAAGACGAATTGACAACTTCTGGAAAACTCAATCCCAGGAAATTGAGAACACCAATGATTTCAACCATGCATTACCTCTGGCGAGGATCAAGAAGATCATGAAAGCTGATGATGAAGTGAAGATGATAGCTGCTGAGGCTCCTATTCTGCTGTCGAAGGCATGCGAGATGTTCATTAAGGAGCTGACAACGAGGGCTTGGGTGAATGCAGAGGAGAACAAGAGGAGGACTCTTCTAAAGAGTGACTTTGCATCCGCAATCTCAAGGACTGATGTGTATGATTTCCTTGTTGATATTGTCCCGAGGAATGAGACAATGGAGCATGATGTATATGCTGGGATTGGGATGCCACCAATGAGGGGAAATGTTGCTAATGTTGTTCAAAATGTTCCTCCTCCTCTTGGTCCTCCTCATCCTTACTACTATATGCCATCACCTGCTTCTCAACATTTTGGTGCTGCAATTCCTCCAAGAATGGTTATGGCAAGGCCTCCTTTTGCTCATCCTATTTACATGCAGCAGCCACCATATCCTTATGGTCTTCAAGTAATGCATCCAGCCCCACAAAATCTGATGATGAAAAATTCTCCAGACTCTGATGATCAGAACAAAAAATAG 822 0.4404 MDEKQPEPKQPEEGQDTPTQEANVMDQNKPNPFMTTNTQIAGGSSSSCYPRGQLYPHQQIHQLQQQHLERRIDNFWKTQSQEIENTNDFNHALPLARIKKIMKADDEVKMIAAEAPILLSKACEMFIKELTTRAWVNAEENKRRTLLKSDFASAISRTDVYDFLVDIVPRNETMEHDVYAGIGMPPMRGNVANVVQNVPPPLGPPHPYYYMPSPASQHFGAAIPPRMVMARPPFAHPIYMQQPPYPYGLQVMHPAPQNLMMKNSPDSDDQNKK* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2384 273 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 19 211 - -
Lja6g2384 273 MobiDBLite consensus disorder prediction 1 31 - -
Lja6g2384 273 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 19 211 - -
Lja6g2384 273 Gene3D Histone, subunit A 55 170 IPR009072 GO:0046982
Lja6g2384 273 MobiDBLite consensus disorder prediction 12 31 - -
Lja6g2384 273 SUPERFAMILY Histone-fold 56 164 IPR009072 GO:0046982
Lja6g2384 273 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 93 155 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2384 Lja-Chr6 52784369 52785190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2384 75 211 CCAAT-HAP5 Transcription Factor Family AT1G56170 60.870 9.05e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lja6g2384 CBFD_NFYB_HMF 2.1e-17 CL0012