Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2373 ATGTCTCACATAACCGTGGAGAGAAACAGAAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGGACCTTGACTCCATGTTTCTATATTAAAAGGGGAGATCAAGCATCTATAATAGGGGGAGTGATAGAGTTCATCAAGGAGTTGCACCAAGTCCTTCAAGCTTTGGAGTCTCAAAAGAGAAGGAAGAGTTTGAGCCCTAGCCCAGGCCCAAGCCCAAGAACAGTTAAGCCAAAACTAGTTCATCATGATCAATTTGATGGCTCCAATGGAATTGGGAGTAACAGTTTCAAGGAACTTGGAGCAAGCTGCAATTCTTCCGTTGCGGATGTGGAAGTGAAAATCTCGGGTTCGAATGTGATTTTGAAAGTGATTTCTCACAGGATTCCAGGACAAGTTGCGAAGATCATCACCGTTTTGGAAAGCCTTTCATTTGAGGTCCTTCATCTGAACATCAGTAGCATGGAGGAGACTGTCCTATACCAATTTGTTGTCAAGATTGGGCTGGGATGTCAACTAAGCCTGGAGGAACTAGCGATGGAAGTACAACAAAGCTTCTGCTCAGAATAA 570 0.4298 MSHITVERNRRRQMNEHLKVLRTLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPRTVKPKLVHHDQFDGSNGIGSNSFKELGASCNSSVADVEVKISGSNVILKVISHRIPGQVAKIITVLESLSFEVLHLNISSMEETVLYQFVVKIGLGCQLSLEELAMEVQQSFCSE* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2373 189 PANTHER TRANSCRIPTION FACTOR MUTE 1 188 - -
Lja6g2373 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 67 IPR036638 GO:0046983
Lja6g2373 189 Gene3D - 1 64 IPR036638 GO:0046983
Lja6g2373 189 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Lja6g2373 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Lja6g2373 189 PANTHER TRANSCRIPTION FACTOR FAMA 1 188 IPR044283 GO:0003700|GO:0010052
Lja6g2373 189 SMART finulus 4 55 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2373 Lja-Chr6 52665989 52667713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2373 1 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 66.497 5.79e-85 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja6g2373 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2373 - - gmx:100810771 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2373 6 52665989 52667713 Lja6g2373 6 52665989 52667713 ECH