Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2372 ATGGGTCATTCATGGAGTGCCAACAACATTAGTGATGATGATACAACAACACCAGACAACAACAACAACAATTTCATTCCACCACCACCACTCCCACCTCTACAACCTCTTCTCATTCCTCCACCGCCACCGCCGCAGGGCTACTTTTTCCCCTTACCAACCCCTTACGCTCCACCCTGTGCCAACTTCGTCACTCCCCCTCCTCCTCTGTCTCTGCCTCCTCAGCCCCATTCCGTCTTCTACTCCAACCCCATTGGCCACCCCAGTTATGCTAACCCTGTCGTCGGTCATGTTCAATTCAACCCTTACTTCACCACTCCACATGGCTGGTTCTCACCTCGCCCTTCTTCTTCTTCTGCTAATTCCTCACTCTCCAACCAACCACCACCACCACCACCCTATGTGAACCATCAAACTACTAAGAAGATCAGGAGCCATGTCAATGTTCACAAAGGCACTCTTCGGTTCGAGCTGGATGATCTCAAGCCTCATCATTACCTCGTTTCTTTTGTTTTTGATGCTGTTTATGATGGCAGCATCACCATCATCTACTTCGCCAATGAAGAAGAGAGATGCAGGTTTGTTCCGCTATTTCCTGATATATTTGAGCCAGTAAGAGTCCCCTTTCAGAAAGGAGTTGGCCAGAAATTTGTTCAGCCTTCAGGAACGGGGACTGACCTAAGCATCTTTGAGTTGGATGCTCTTACAAAGTCCTCGCCTGAAGAGGATGCCTTTCCTTTGATAATATGCGCCGAAACATGTGCAATAGACGAAACTCCTGGACATTCCATGCCAGGTGCACATCCACCACCTCACATGCAAATAACTCAGTGTGTCTTACAGAGAAGCAATGGTGGCGGTGCTTTCCAGATAAAAGTAGTTAGGCAGATTCTGTGGATTGATGGTGTTCGTTATGAGTTGAGGGAGTTATATGGAATAGGAAGCTCAGGAGCAACAGATTTTGATAACAGTGAACCAGGGAAAGATTGTGTAATATGCATGATTGAACCAAAAGATACCGCTGTCTTACCTTGTCGACACATGTGTATGTGCAGTGAGTGTGCCAAAACTCTGAGGCTTCAGTCCAACAAATGCCCTATATGCCGTCAATCTATTGAGGAACTTATAGAGATCAAGATGAACAACAGCTATCATCAGTGA 1161 0.4668 MGHSWSANNISDDDTTTPDNNNNNFIPPPPLPPLQPLLIPPPPPPQGYFFPLPTPYAPPCANFVTPPPPLSLPPQPHSVFYSNPIGHPSYANPVVGHVQFNPYFTTPHGWFSPRPSSSSANSSLSNQPPPPPPYVNHQTTKKIRSHVNVHKGTLRFELDDLKPHHYLVSFVFDAVYDGSITIIYFANEEERCRFVPLFPDIFEPVRVPFQKGVGQKFVQPSGTGTDLSIFELDALTKSSPEEDAFPLIICAETCAIDETPGHSMPGAHPPPHMQITQCVLQRSNGGGAFQIKVVRQILWIDGVRYELRELYGIGSSGATDFDNSEPGKDCVICMIEPKDTAVLPCRHMCMCSECAKTLRLQSNKCPICRQSIEELIEIKMNNSYHQ* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2372 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 383 - -
Lja6g2372 386 PANTHER MAHOGUNIN 1 383 IPR045194 GO:0061630
Lja6g2372 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 380 IPR013083 -
Lja6g2372 386 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 329 369 IPR045195 -
Lja6g2372 386 Pfam Zinc finger, C3HC4 type (RING finger) 329 374 - -
Lja6g2372 386 SUPERFAMILY RING/U-box 329 376 - -
Lja6g2372 386 MobiDBLite consensus disorder prediction 115 138 - -
Lja6g2372 386 MobiDBLite consensus disorder prediction 23 43 - -
Lja6g2372 386 MobiDBLite consensus disorder prediction 1 43 - -
Lja6g2372 386 ProSiteProfiles Zinc finger RING-type profile. 330 369 IPR001841 -
Lja6g2372 386 MobiDBLite consensus disorder prediction 1 22 - -
Lja6g2372 386 SMART ring_2 330 368 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2372 Lja-Chr6 52645912 52650018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2372 96 386 C3H Transcription Factor Family AT3G06140 55.446 3.79e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2372 - - gmx:100808808 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2372 6 52645912 52650018 Lja6g2372 6 52645912 52650018 ECH