Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2367 ATGGATGCTCTGGTGAACCATCATGCAGAGTTCAGGTTGAGATACGAGTGTTGCTTCCTCTGGGTTGATGTTTCACTCCCTGTTCTCCATTCCTCGCTTCAGGCCCGTGCGGATCGCATGATTGAGGCGGGGCAAGTGGATGAGGTTCGTGAATTCTTCGATCCTTCTGCGGATTACACTAGAGGGATCAAAAGGGCGATTGGTGTGCCGGAGTTTGACGATTTCTTGAGAGCAGAGGCGAATGGGGAAGATGACATGACGATACTGCGGCTTCTGGAGGGTGCCATTGCGAGGACCAAGATTAACAACTGCACCCTCGCCAATCGCCAGGTTCAGAAGATTCATCGCCTCCACAGGGTGTGGAGGAGGAGCATGCATCAGTTAGATGCCACTGACGTCTTCCTCCGAAGAAGCAGCGGTGACTCTGCTGATTCGGAGGAAGCGTGGCAGGATCACGTGCTCGCCAAGAGTCTCATGATCCTGCATAACTTTCTCTACAAGGAAATTTCTTGTGTTCCGACTAGGTCACCGCAGGTGGCCCTCCCGGCCTTTGCGGCGGTGGCGGTGACACACTAG 576 0.5399 MDALVNHHAEFRLRYECCFLWVDVSLPVLHSSLQARADRMIEAGQVDEVREFFDPSADYTRGIKRAIGVPEFDDFLRAEANGEDDMTILRLLEGAIARTKINNCTLANRQVQKIHRLHRVWRRSMHQLDATDVFLRRSSGDSADSEEAWQDHVLAKSLMILHNFLYKEISCVPTRSPQVALPAFAAVAVTH* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2367 191 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 1 169 IPR039657 -
Lja6g2367 191 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 1 169 - -
Lja6g2367 191 Pfam IPP transferase 11 112 - -
Lja6g2367 191 Gene3D - 8 165 IPR027417 -
Lja6g2367 191 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 26 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2367 Lja-Chr6 52572787 52574935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2367 14 168 C2H2 Transcription Factor Family AT2G27760 32.044 1.58e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2367 K10760 - gmx:100812928 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2367 6 52572787 52574935 Lja6g2367 6 52572787 52574935 ECH
Lja4g1188 4 10552846 10554553 Lja6g2367 6 52572787 52574935 PCT