Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2350 ATGTCACGGAAGGGTTTGATGGAACAAGACCTGAGTAAGTTGGATGTGACAAAATTGCATCCACTTTCTCCTGAAGTCATATCTCGGCAAGCTACTATTAATATTGGCACCATAGGCCATGTGGCCCATGGAAAGTCAACCGTTGTGAAAGCAATATCAGGTGTTCAGACCGTGCGTTTTAAAAGTGAGTTGGAACGTAACATTACAATAAAGCTTGGCTATGCAAATGCAAAAATATATAAATGTGAAGATGCACGATGTCCGAGGCCTATGAGCTACAAGGCTTATGGAAGTGGGAAGGAAGATGCTCCTATGTGTGAAGTACCAGAGTTTGAAAACTGCAGGATGAAATTGTTGAGACATGTTTCTTTTGTGGATTGCCCGGGACATGATATTCTCATGGCTACAATGCTTAATGGAGCAGCAATCATGGATGGAGCTCTGCTACTCATTGCTGCTAATGAAAGCTGCCCTCAACCTCAAACTTCTGAGCATTTAGCTGCGGTTGAAATTATGCGTCTGCAGCACATTATAATCCTTCAGAACAAGGTAGACCTAATCCCAGAAAACGTGGCAATCAATCAGCATGAAGATATTCAGAAGTTCATTGCAGGAACTGTTGCTGTTACGGCACCTGTGGTACCTATTTCAGCACAATTGAAGTATAACATTGATGTTGGTGTTTTAAAGGTCAACCAATTCATTGAAGTTCGACCTGGGTTAATTGGTAAAGATGAGAATGGAAACATTCAATGCTCACCCATATACTCCAGGATAGTTTCATTGTACGCTGAACAAAATGAGCTTCAATTTGCTGTGCCTGGAGGCCTTATTGGTGTTGGGACCACGATGGATCCCACTTTGACGCGTGGTGACCAGTTGGTAGGGCATATTCTTGGAGAGGTTGGATCACTGCCTGAGGTTTTTGTTGAACTTGAGGTTAACTTTTTCTTGCTTCGGCGGCTTCTTGGTGTCCGGACAAAAGGCTCAGAGAGACAGGAAAAGGTAGCTAAGCTGACCAAAGGAGAGCCGCTACTGTTGAACATTGGATCAATGTCAGCAGGTGGCAAAGTAATTGCTGTGAGGAATGACCTTGCTAAATTGCAACTCACTACCCCTGTGTGTACTAGCAAGGGTGAGAAGATCGCACTTAGTCGACGTGTCAAGAAGCTTTGGCGTCTTATCGGGTGGGGTCAAATTCAAGCCGGAATCACTCTTGATGTCCCTCCTGCCCCTGCACTGTGTTGA 1248 0.4439 MSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKSELERNITIKLGYANAKIYKCEDARCPRPMSYKAYGSGKEDAPMCEVPEFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIPENVAINQHEDIQKFIAGTVAVTAPVVPISAQLKYNIDVGVLKVNQFIEVRPGLIGKDENGNIQCSPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRGDQLVGHILGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQEKVAKLTKGEPLLLNIGSMSAGGKVIAVRNDLAKLQLTTPVCTSKGEKIALSRRVKKLWRLIGWGQIQAGITLDVPPAPALC* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2350 415 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 304 401 IPR009001 -
Lja6g2350 415 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 227 412 - -
Lja6g2350 415 Pfam Elongation factor Tu GTP binding domain 32 225 IPR000795 GO:0003924|GO:0005525
Lja6g2350 415 Pfam Initiation factor eIF2 gamma, C terminal 311 400 IPR015256 -
Lja6g2350 415 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 1 226 - -
Lja6g2350 415 Gene3D Translation factors 292 408 - -
Lja6g2350 415 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Lja6g2350 415 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Lja6g2350 415 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Lja6g2350 415 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Lja6g2350 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 226 IPR027417 -
Lja6g2350 415 SUPERFAMILY Translation proteins 224 303 IPR009000 -
Lja6g2350 415 CDD eIF2_gamma_II 227 303 IPR044127 GO:0000049
Lja6g2350 415 Gene3D - 30 237 IPR027417 -
Lja6g2350 415 CDD eIF2_gamma_III 306 400 IPR015256 -
Lja6g2350 415 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 226 - -
Lja6g2350 415 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 227 412 - -
Lja6g2350 415 CDD eIF2_gamma 33 239 IPR044128 GO:0005525
Lja6g2350 415 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 240 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2350 Lja-Chr6 52401420 52415238 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2350 1 412 Eukaryotic Initiation Factors Gene Family AT1G04170 75.647 0.0 705