Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2345 ATGGAACTGGGGAGGCGGAAATGGATTTTTCTGCAGAATGGTGCTATACCTATAAATTCTTTTCCTGGAGTACCTTCCAGGCCAAGGACAAGATTGCTTGGAGAAGCCAATGATGAACCCACTTGTCCCTCTATTATTAGTAATTTCAAGCGCCAAAGAAAGGAAGAACTTGAAGGACAGCCCGGGATTGAACCATATATCGGTCAAGAGTTCAATTCACCTGATGAAGCCTACCAATTTTATCATGCATATGCAGCATGTGTGGGTTTTGGGATCCGAATTGGTCAATTGGTTCGTTCTAAGAATGATGGGTCTGTTTCTGCTCGAAGATTCGTTTGCTCAAAAGAGGGACACCAGGTTAAGTCAAGAACAGGCTGCAAAGCACTCATAAGAGTACAAATAAATGAATCTGGAAAGTGGGTTATTGATCATCTTAATAAGAACCACAATCACAATCTTGAAATTGGAAGTGCAAATCGCACTCCGTCATTGCAGCTGAATGATGCTATACCTATAAATTATTTTCCTGAAGTACCTTCCAGGCCAAGGACAAGATTGCTTGGAGAAGCCAATGATGAATTTGAAGGACAGTCCATCACTGAACCATATATCGGTCAAGAGTTCAATTCACCTGATGAAGCCTACCAATTTTATCATGCATATGCAGCATATGTGGGTTTTGGGATTCGAATTGGTCAACTGTTTCGTTCTAAGAATGATGGGTCAATCACATCGCGCCGTTTTGTGTGCTCAGAAGAGGGGTTTCCGCATCCTTCAAGACTTGTTTGTGGGGCTTATTTAAGAATTAAGAGACTGTCATCAGGAAAGTGGGTAGTAGACCATCTCGAGAAAGATCATAATCATGATCTTGATGCTGAAATGGCAGGTAAGGCAAACTGTCTTCGTGCTTCTGATAGTTTGACAGAGGAGGTAAATACTGGACTGGTAAAAGGTGACTTATTTAGGATAGATAACTATCCTGTCCCTAGAGGAGGTAGACAAAATCACATAAGAAGTGATTGGTACAACATGCTTTTAGATTATTTTCAATCAAGACAAGCAGAAGATACAGGATTTTTCTATGCTATGGAAGTTGATAATGGTAATAGCATGAGCATATTTTGGGCTGATGGCAGATCTAGATATTCATGTAGTCTGTTTGGTGATGTCCTTGTCATAGACACATCATATCGAGAAAGTGACTATTTGGTACCATTGGCTACTTTCGTTGGAGTTAATCATCACAAGCAACCTGTGCTTCTGGGATGTGCTCTAATTGCTGATGAATCTGAAGAGGCTTTCACTTGGTTGTTTCAGACTTGGCTAAGGGCAATGTCTGGCCGACAGCCTCTGTCAGTGATAGCTGATCAAGACATTGCAATTCAGAGGGCAATAGCGAAAGTCTTTCCCGTAACTCATCATCGCTTTTCATTGTGGCAAATTAAGGCGAATGAACAAGTGAATGCAGGTCTGATGGGTGATGGATTTACAAAAGATTATGAAAAGTGTGTTTACCAGAGTCAGACAGTTGATGAATTTGACACCACATGGAATGCCTTACTCGACAAATATGGATTGAAGGGCAATGCTAGGCTAAAAGAAATGTATGAGAAGCGTGCATCCTGGGTTCCATTATATTTAAAGGGCTCATTTTTTGCTGGAATTCCCATGAATGGAAGCGTGGATTCATTCTTTGGGGCACATTTAAATGCCCAAACACCTCAAACAGAGTTCATCCGAAGATATGAAAGAGGTATTGAGCAACGCCGTGAGGAAGAAAGAAAAGAGGATTTTAATGCTTCTAATTTTCTGCCCTTTATACGAACAAAAGAACCAGCAGAAGAACAATGCAGAAGGCTTTACACCCTTGCAGTATTCAAAATATTTCAAAAAGAGCTCTTGGAGTGCTATAGTTATCTCGGGCTTAAAACATATGAAGAAGGAGGCCTCAGCAGATATTTGGTGCATAGGCTTGGAGATGATATGAAACAGCATGTAGTTACATTTAATGCATCCAATCTTAGCATTAGTTGCAGCTGTCAAATGTTTGAATATGAAGGTGTTCTTTGTAGACATGCCTTGAGGGTTTTCCAAATATTGGAATTAAGAGAAGTTCCTTCTCGCTACATCTTACACCGATGGACGAGAAATGCTGAAGATGGTGTTTTTCCTGACATAGAATCATGGAGTAGCTCTCAGGAACTAAACAATCTGATGATGTGGAGTCTAAGAGAAACTGCATCTAAATATATAGATGCTGGCGCAACATCCATCGATAAGTACAAACTTGCGTATGAGATATTGCGAGAGGGTGGGAGAAAGCTAGGCTGGAACGGGTGA 2340 0.4081 MELGRRKWIFLQNGAIPINSFPGVPSRPRTRLLGEANDEPTCPSIISNFKRQRKEELEGQPGIEPYIGQEFNSPDEAYQFYHAYAACVGFGIRIGQLVRSKNDGSVSARRFVCSKEGHQVKSRTGCKALIRVQINESGKWVIDHLNKNHNHNLEIGSANRTPSLQLNDAIPINYFPEVPSRPRTRLLGEANDEFEGQSITEPYIGQEFNSPDEAYQFYHAYAAYVGFGIRIGQLFRSKNDGSITSRRFVCSEEGFPHPSRLVCGAYLRIKRLSSGKWVVDHLEKDHNHDLDAEMAGKANCLRASDSLTEEVNTGLVKGDLFRIDNYPVPRGGRQNHIRSDWYNMLLDYFQSRQAEDTGFFYAMEVDNGNSMSIFWADGRSRYSCSLFGDVLVIDTSYRESDYLVPLATFVGVNHHKQPVLLGCALIADESEEAFTWLFQTWLRAMSGRQPLSVIADQDIAIQRAIAKVFPVTHHRFSLWQIKANEQVNAGLMGDGFTKDYEKCVYQSQTVDEFDTTWNALLDKYGLKGNARLKEMYEKRASWVPLYLKGSFFAGIPMNGSVDSFFGAHLNAQTPQTEFIRRYERGIEQRREEERKEDFNASNFLPFIRTKEPAEEQCRRLYTLAVFKIFQKELLECYSYLGLKTYEEGGLSRYLVHRLGDDMKQHVVTFNASNLSISCSCQMFEYEGVLCRHALRVFQILELREVPSRYILHRWTRNAEDGVFPDIESWSSSQELNNLMMWSLRETASKYIDAGATSIDKYKLAYEILREGGRKLGWNG* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2345 779 Pfam SWIM zinc finger 672 698 IPR007527 GO:0008270
Lja6g2345 779 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 192 775 IPR031052 GO:0006355
Lja6g2345 779 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 156 IPR031052 GO:0006355
Lja6g2345 779 Pfam MULE transposase domain 390 484 IPR018289 -
Lja6g2345 779 Pfam FAR1 DNA-binding domain 216 290 IPR004330 -
Lja6g2345 779 Pfam FAR1 DNA-binding domain 79 153 IPR004330 -
Lja6g2345 779 SMART 26again6 676 703 IPR006564 GO:0008270
Lja6g2345 779 ProSiteProfiles Zinc finger SWIM-type profile. 665 701 IPR007527 GO:0008270
Lja6g2345 779 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 192 775 - -
Lja6g2345 779 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 29 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2345 Lja-Chr6 52349854 52352622 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g2345 MULE 9.3e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2345 - - gmx:100816656 1151.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2345 6 52349854 52352622 Lja6g2345 6 52349854 52352622 ECH