Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2337 ATGGGTTGTGTCCATGGCAAGTGCTGTAGCCGCTACCCTTCAACTTCAGTTGGTGGCTCCCGGGACCACCGAGAACTTGGCCCTTATTGTGCACAAAGGAAGCACAATCTCACTCAAAGGTCACTGCAATCTGTTCCTGTCCCTTCCCACAATTTCAATTTGGAATACTCTGTGCTCACTCAAAGGGGTTACTACCCTGACTCACCTGATAAAGAAAACCAGGATTGTTTCTGTATTAAGACACAGTTTCAAGGTAACCCGAGTGTCCATTTCTTTGGTGTCTATGATGGTCATGGTGAATTTGGTAGTCTGTGTTCAAATTTTGTAAAGGATAGGTTGGTGGAAAATTTGTCCAATGATCCTGCATTGTTGGAGGACCCTGTTAAGGCGTATACATTATCCTTCTTGGCAACAAATGATGACTTGCATAAGAATGAGATTGATGATTCTTTGAGTGGTACCACGGCGATTACGGTGCTTGTAATTGGGGACACACTTTATGTTGCTAATGTTGGTGATTCCAGAGCTGTGCTGGCAGTTAAGGATGGGAATCAAATTGTCGCCGAGGACTTGTCCTCTGATCAGACACCATTTCGAAGAGATGAATATGAGAGGGTGAAGCTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAGGTGGAAGGGAATAAGGATCCGGGTATTCAGAATTGGGGCGATGAAGAGAGTCAGGGTGATGATCCTCCGAGATTGTGGGTTCAGAATGAGATGGTTCCGGGAGCAGCTTTTACAAGGAGTGTAGGTGATAGTTTGGCTGAGACTATTGGTGTCATTGCTGTTCCTGAGGTGTCAACGGTTCAGCTAACACCTAATCATCTTTTCTTTGTTGTTGCAAGTGATGGCGTATTTGAGTTCCTTTCAAGCCAAATTGTTGTTGATATGGCTGCAAGTTATTCAGATCCCCGTGATGCATGTGCGGCCATTGCTGGAGAGTCATATAAACTTTGGCTGGAACATGAGGGCCGAACAGATGATATAACAATTATCATTGTTCAGATTAAAGGCCTGTCTCATTCGGGTAAATCTGGATTCGGATCAGGTGAGATAAATGTCAGCACTGTAACAAGGGCCAAGAAAGGAAAGGGAACTTCTGAGATATCTACTACCACCGGGTTAGACGTTTATCATTCTGTGAGGGCTGGTTTCTCTGATTCACAGTCATGTCAGCATACGATCTCAACGAGAAGTCCAGCCTTAGTAGTTCCCTCTCCAGCATGTCAAAAACCGATTGACTTGTGA 1275 0.4486 MGCVHGKCCSRYPSTSVGGSRDHRELGPYCAQRKHNLTQRSLQSVPVPSHNFNLEYSVLTQRGYYPDSPDKENQDCFCIKTQFQGNPSVHFFGVYDGHGEFGSLCSNFVKDRLVENLSNDPALLEDPVKAYTLSFLATNDDLHKNEIDDSLSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNQIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGNKDPGIQNWGDEESQGDDPPRLWVQNEMVPGAAFTRSVGDSLAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQIVVDMAASYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSHSGKSGFGSGEINVSTVTRAKKGKGTSEISTTTGLDVYHSVRAGFSDSQSCQHTISTRSPALVVPSPACQKPIDL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2337 424 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 25 420 - -
Lja6g2337 424 Gene3D - 40 347 IPR036457 -
Lja6g2337 424 SMART PP2C_4 51 343 IPR001932 -
Lja6g2337 424 CDD PP2Cc 71 345 IPR001932 -
Lja6g2337 424 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Lja6g2337 424 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Lja6g2337 424 SUPERFAMILY PP2C-like 46 347 IPR036457 -
Lja6g2337 424 Pfam Protein phosphatase 2C 74 320 IPR001932 -
Lja6g2337 424 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 25 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2337 Lja-Chr6 52249419 52253392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2337 1 350 PP2C-type Phosphatase Gene Family AT3G06270 71.714 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2337 - - aprc:113872580 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2337 6 52249419 52253392 Lja6g2337 6 52249419 52253392 ECH
Lja4g1215 4 10775952 10779638 Lja6g2337 6 52249419 52253392 PCT