Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2330 ATGAAGAAGATTGGCAATGTGGTGCAGGGTTTGAAGCCAATGATGCTAATGGTAGCAGTGCAGGTATCATATGTTGGGGCAAATGTACTGTACAAGCTGGCCATAAACGATGGCATGAGCTTGAGGGTGGTTATTGCCTACCGCTATGTATTCGCTACAGCTTCTATAGCTCCACTTGCGCTCATTCTTGAAAGGAAGAAGAGGTCAAAGATGACTTGGAATGTGCTGTTTCAGTTATTTCTGTGCGCTTTATTTGGAGGAGTATTAACTCAAAATTTCTACTTAGAGTCCCTGGTTTTAACTTCGGTAACGTTTGCATCCGCCATGTCCAACCTTGGATCCGCTATAACCTTTATCATGGCCGCTTCCTTCGGATTGGAAAAAGTCAATTTGAAAACGGCAGCAGGTAAAGCTAAGATAGTGGGTACAGTAACTGGAATTACTGGGGCAATGGTACTGACTTTGGTTAAAGGCATGGAAATCAAAATGGGGTCCTCCCACGTACATCTTTTGCATCACCAAAACGGTGCGCACCCTCACGCTAATACCGGTGGTACCGGTAAGAACCTCTTGGGTGCTCTTTTCAACCTAGCCAGTAACATCGCTTTCTCATTGTGGCTCATAATTCAGAAAAAGATAACTGACAAGTACCAGAGTCATTACACAACCACCACGTTGATATCGTTTTGGGCATCAGTGATATCCATTGTGTTTGCTCTTTGCACTGAGAGGGATTGGAGTCAGTGGAGGCTGGGTTGGAATGTTAGATTATTAACTGTTGCTTATGCGGGTATAGTGGTTTCTGGACTGGTGGTGGTTGTACTTTCATGGTGTATCCAAATGAGAGGCCCGTTGTATGTATCTGTTTTCAATCCCCTGGGGCTTGTGATTTTGGCCTTCGCTTGTTCTCCGCTATTGAACGAGAACATATACCTTGGAAGGTACGTATTATTAGAAGAAGAACAGGAGCAAGATGACATGGATGGTGCTGTTTCAGTCTTTTCTGTGTGGTTTATTTGGATGAAAGACAATATTGGCAATGTGGTGCAGGGGTTGAAACCAACGTTGCTAATGGTGGCTGTGCAGATAGCATTTGCAGGGGTGAATGTGCTCTACAAGCTCGCCTTAAACGATGGCATGAACTTGAGGGTGGTTAGTGCCTACCGCTTTGTATTCGCCACTGCTTTCATGGCTCCACTTGCTCTTATCCTTGAAAAGGTTACATTGTCTCAAATTTTGTACTTAGAGTCCCTGGCTTTAACTTCAGTGACATTTGCATCTGCCATGTCCAACCTTACACCAGCCATAACCTTTATCATTGCCGCTTCCTTCGGATTGGAAAAAATAAATTTGAAAACAGTAGCAGGGAAGGCTAAGATAGTAGGTACAATAACTGGAATTGGTGGAGCAATGGTACTGACTCTGGTTAAAGGCATGGAAATTAAAATTTGGTCCTTCCATCACATACACCTTTTGCATCACCAAAATGGTGCTCACCAACACGCTACAAGCACTGGTAAGAACCTTTTGGGTGCTCTCTGTGCACTAGCCAGCAGCATCTCTTACGCATTGTGGCTTACTATTCAGAAAAAAATGACTGAAAGTTACCAGAGTTATTACACAAGCACCGCATTGTTGTCATTTTGGGCATCAGTACTATCCGTCCTGTTTGCTCTTTGCATTGAGAGGGATTTGAGTCAGTGGAGGCTGGGTTGGAATGTTAGATTACTAACTGTTGCTTATGCGGGTACAGTGGTTTCTGGACTGGTGGTGGTTGTAATTTCATGGTGTATCCAAATGAGAGGTCCTTTGTTTGCCTCTGTTTTCATGCCTCTGGTTCTTGTGATTTTGGCCTTTCTTTGTTCTCCGCTATTGAACGAAACCCTATACCTTGGAAGATGA 1902 0.4385 MKKIGNVVQGLKPMMLMVAVQVSYVGANVLYKLAINDGMSLRVVIAYRYVFATASIAPLALILERKKRSKMTWNVLFQLFLCALFGGVLTQNFYLESLVLTSVTFASAMSNLGSAITFIMAASFGLEKVNLKTAAGKAKIVGTVTGITGAMVLTLVKGMEIKMGSSHVHLLHHQNGAHPHANTGGTGKNLLGALFNLASNIAFSLWLIIQKKITDKYQSHYTTTTLISFWASVISIVFALCTERDWSQWRLGWNVRLLTVAYAGIVVSGLVVVVLSWCIQMRGPLYVSVFNPLGLVILAFACSPLLNENIYLGRYVLLEEEQEQDDMDGAVSVFSVWFIWMKDNIGNVVQGLKPTLLMVAVQIAFAGVNVLYKLALNDGMNLRVVSAYRFVFATAFMAPLALILEKVTLSQILYLESLALTSVTFASAMSNLTPAITFIIAASFGLEKINLKTVAGKAKIVGTITGIGGAMVLTLVKGMEIKIWSFHHIHLLHHQNGAHQHATSTGKNLLGALCALASSISYALWLTIQKKMTESYQSYYTSTALLSFWASVLSVLFALCIERDLSQWRLGWNVRLLTVAYAGTVVSGLVVVVISWCIQMRGPLFASVFMPLVLVILAFLCSPLLNETLYLGR* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2330 633 PANTHER WAT1-RELATED PROTEIN 408 632 IPR030184 GO:0016021|GO:0022857
Lja6g2330 633 PANTHER WAT1-RELATED PROTEIN 353 407 IPR030184 GO:0016021|GO:0022857
Lja6g2330 633 PANTHER WAT1-RELATED PROTEIN 12 314 IPR030184 GO:0016021|GO:0022857
Lja6g2330 633 PANTHER WAT1-RELATED PROTEIN 353 407 - -
Lja6g2330 633 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 147 - -
Lja6g2330 633 SUPERFAMILY Multidrug resistance efflux transporter EmrE 388 463 - -
Lja6g2330 633 PANTHER WAT1-RELATED PROTEIN 12 314 - -
Lja6g2330 633 PANTHER WAT1-RELATED PROTEIN 408 632 - -
Lja6g2330 633 Pfam EamA-like transporter family 510 631 IPR000620 GO:0016020|GO:0016021
Lja6g2330 633 Pfam EamA-like transporter family 12 144 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2330 Lja-Chr6 52159503 52182343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2330 343 632 Nodulin-like Gene Family AT1G68170 42.444 6.96e-77 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2330 - - gsj:114424758 558.14