Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2301 ATGGCACACACCTTAACTGGGCAGCTTGTGGGTTCAGAGATACATGGCTTCCACACTTTGCAGGACCTGGATGTTGAGAACACTTTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCCAATGAGATTCATGCTATACTCTGTAACCACAAATATTTCACCATCTATGTCAAGCCAGTCCGTTTGCCCAAAAGTGGTACAATTGTACTATTTGACCGCAAGATGCTTAGGAACTTCCGAAAAGACGGGCACAACTGGAAAAAGAAAAAAGATGGGAAAACTGTTAAAGAAGCACATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACCCTAGCTTTGTTCGTAGATGTTATTGGTTACTTGATAAGAGTCTGGAGCACATAGTCCTTGTCCATTATCGTGAAACGCAGGAGTCACAAGGTTCTCCTGCTACACCTGTAAATTCAACTTCAAGTTCTGCCTCTGGTCCAACTGGACCTTTGATTTTATCAGAAGACTTGGATTCTGGGACCAACAATGCTTACACTGAAGGGCTTAATGACAATTTAACAACCGAAAGTCATGACCTGAGGCTTCATGAGATTAATACACTCGAATGGGATGACCTACTGGTTCCAAATGCTAACACCTCTAATGTGCCTAATGGAGGCAATGAACTATATTTGTATCAACAAAATCAAACTTCTCCGAATGACAGTTTTGGCAATGTTGCCAGTAATCCTTCTGCAGAAATACCTTCTTTTGGTAACTTAACTCAGCCTATTTCTGGAAGCAACAATGTTCCTTACAATTTTCCAGAAAGCGTTAATCTTCAGAGTAATTGTCCTATCTCTTCTGGTGGTGTTGGTTCCATAGGCACGGTAGTCGATGAAGGCTTGCAAAAACAGGACAGCTTTGGAACATGGATAAACAACATAATATCTGATACACCATGTTCTGTAGATGGGTCAGCTCTTGTATCATCAATTTCTTCATCAGTAGTGGTGGATAATCAGCCATCTTATCTGCCAGAACAAGTATTTAATCTCACTGAGGTGTCCCCTACTTGGGCATCTTCCACTGAGAAGACAAAGGTCTTGGTAACTGGATTTTTTCATAATGACTATCAACACCTTACAAAGTCTAATCTACTGTGTGTATGTGGTGATGTAAGTGTTCCTCTAGAATTTGTTCAGGTTGGAGTTTATCGATGTTGGGTATCACCACATTCTCCTGGATTCGTGAATCTCTATATGAGCTTGGATAGCCAAAAGCCCATTAGCCAAGTTGTTAATTTTGAGTATAGGACTCCTATTTTGCATGATCCTGCTTCCTCAATGGAACAGAAATACAACTGGAATGAATTTCGGCTTCAGACGAGGCTTGCTCATTTGCTCTTCACTACAAAAAGGAGCCTTGATGCTTTCTCTAGTAAAGTATCACCTAATGCACTGAAAGAGGCTAGAAAGTTTGCAGACAAAACATCATTTGTTACCAAATATTGGCAGAACCTGATGAAGTCAGTTGACGACAATACAGCTCCATTTCCACAAGCAAAAGACGACCTATTTGAAATTGCATTGAAAAACAAACTAAAGGAATGGCTTTTGGAACGAATTGTCTTAGGATGTTGTAAGACTACCGAGTACGATTCACAAGGCCAAGGTGTAATTCATTTGTGTGCTGTTTTGGGATATACGTGGGCTGTTTCTCTATTTTCATGGTCAGGCTTGTCCCTGGATTTCCGTGACAAATTCGGATGGACAGCTCTTCATTGGGCAGCCTATTATGGAATGGAGAAAATGGTTGCAGTTCTGTTGTCTTATGGGGCAAGACCTAACTTAGTCACAGATCCAACTCCACAAAATCCTGGTGGATGTACTGCTGCTGATCTTGCTTATATGAAGGGATATGATGGCTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAACATCAGTGGCTCACTGGAAACAACTAGCACAACTGATCCAGTAAATCCTGAGAACCTCACTGAGGACCAGTTATACATAAAGGATACATTGGCAGCTTACCGCACAGCTGCCGAGGCAGCAGCGCGCATACAGGTTGCATTTAGGCACCGCTCATTGAAATTGCGATCTCAGGCTGTTGAGTTTCTCAGCCCGGAGGAAGAAGCGCGTCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTCGAGACAAGGAAAATGATGGCAGCTGCTGCTCGGATCCAGTATAGATTCCGTACATGGAAGATGCGCAAAGACTTTCTCCTCATGCGACGTCAGGCTATTAGAATTCAATCTGCATTCAGGGCCTTTCAAGCGCGGAGGCAGTATCATAAAATCATGTGGTCTGTTGGAGTGCTGGAGAAAGCAATCCTGCGTTGGCGTTTAAAGAGAAAAGGCTTCCGTGGGCTCCAGGTGAATCTGGATGAAGAAATGAAAGACGAGAAGCAGGAAAGTGATGTAGAGGAGGAATTCTTTCGGACTGGTAGGAAACAAGCAGAAGAACGTGTTGAGAGGTCTGTGGTACGTGTACAGGCCATGTTCCGTTCTAAGAAAGCACAAAAAGAGTATAGCAGGATGAAGATGGCACATAGTCAAGTCAAGCTGGAACTGGAATTAGAAGAGTTCCTCAATTCTGAAGTTGACATGTCATCAAGTAAGATATAG 2724 0.4251 MAHTLTGQLVGSEIHGFHTLQDLDVENTLEEAKSRWLRPNEIHAILCNHKYFTIYVKPVRLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPSFVRRCYWLLDKSLEHIVLVHYRETQESQGSPATPVNSTSSSASGPTGPLILSEDLDSGTNNAYTEGLNDNLTTESHDLRLHEINTLEWDDLLVPNANTSNVPNGGNELYLYQQNQTSPNDSFGNVASNPSAEIPSFGNLTQPISGSNNVPYNFPESVNLQSNCPISSGGVGSIGTVVDEGLQKQDSFGTWINNIISDTPCSVDGSALVSSISSSVVVDNQPSYLPEQVFNLTEVSPTWASSTEKTKVLVTGFFHNDYQHLTKSNLLCVCGDVSVPLEFVQVGVYRCWVSPHSPGFVNLYMSLDSQKPISQVVNFEYRTPILHDPASSMEQKYNWNEFRLQTRLAHLLFTTKRSLDAFSSKVSPNALKEARKFADKTSFVTKYWQNLMKSVDDNTAPFPQAKDDLFEIALKNKLKEWLLERIVLGCCKTTEYDSQGQGVIHLCAVLGYTWAVSLFSWSGLSLDFRDKFGWTALHWAAYYGMEKMVAVLLSYGARPNLVTDPTPQNPGGCTAADLAYMKGYDGLAAYLSEKSLVEQFNDMSLAGNISGSLETTSTTDPVNPENLTEDQLYIKDTLAAYRTAAEAAARIQVAFRHRSLKLRSQAVEFLSPEEEARQIVAAMKIQHAFRNFETRKMMAAAARIQYRFRTWKMRKDFLLMRRQAIRIQSAFRAFQARRQYHKIMWSVGVLEKAILRWRLKRKGFRGLQVNLDEEMKDEKQESDVEEEFFRTGRKQAEERVERSVVRVQAMFRSKKAQKEYSRMKMAHSQVKLELELEEFLNSEVDMSSSKI* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2301 907 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Lja6g2301 907 SMART CG_1_2 28 146 IPR005559 GO:0003677
Lja6g2301 907 ProSiteProfiles IQ motif profile. 776 800 IPR000048 GO:0005515
Lja6g2301 907 Gene3D - 752 801 - -
Lja6g2301 907 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 903 - -
Lja6g2301 907 ProSiteProfiles IQ motif profile. 857 885 IPR000048 GO:0005515
Lja6g2301 907 MobiDBLite consensus disorder prediction 145 189 - -
Lja6g2301 907 SUPERFAMILY Ankyrin repeat 547 650 IPR036770 -
Lja6g2301 907 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Lja6g2301 907 ProSiteProfiles IQ motif profile. 753 779 IPR000048 GO:0005515
Lja6g2301 907 ProSiteProfiles Ankyrin repeat region circular profile. 588 616 - -
Lja6g2301 907 Gene3D - 518 657 IPR036770 -
Lja6g2301 907 SMART ANK_2a 588 617 IPR002110 GO:0005515
Lja6g2301 907 SMART ANK_2a 627 658 IPR002110 GO:0005515
Lja6g2301 907 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 903 - -
Lja6g2301 907 SUPERFAMILY E set domains 351 438 IPR014756 -
Lja6g2301 907 Pfam IQ calmodulin-binding motif 778 797 IPR000048 GO:0005515
Lja6g2301 907 SMART iq_5 855 877 IPR000048 GO:0005515
Lja6g2301 907 SMART iq_5 752 774 IPR000048 GO:0005515
Lja6g2301 907 SMART iq_5 775 797 IPR000048 GO:0005515
Lja6g2301 907 Pfam Ankyrin repeats (3 copies) 529 617 IPR002110 GO:0005515
Lja6g2301 907 Gene3D Immunoglobulins 346 441 IPR013783 -
Lja6g2301 907 ProSiteProfiles Ankyrin repeat profile. 588 620 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2301 Lja-Chr6 51957456 51967657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2301 29 889 CAMTA Transcription Factor Family AT3G16940 56.322 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lja6g2301 CG-1 4.7e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2301 K21596 - gmx:100819198 1387.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2301 6 51957456 51967657 Lja6g2301 6 51957456 51967657 ECH
Lja4g1338 4 12018966 12028963 Lja6g2301 6 51957456 51967657 PCT