Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2294 ATGGGAAGAGCTCCTTGCTGTGAGAAAGTGGGGTTGAAGAGAGGAAGATGGAGTGAAGAAGAAGATAAGATCTTGACAGATTTCATCAAGCAAAATGGTGAAGGATCATGGAAGTCCTTGCCCAAGAATGCAGGTTTGTTAAGGTGTGGAAAGAGTTGCAGGCTAAGATGGATCAACTATTTGAGAGAAGATGTGAAGAGAGGCAACATCACTTCTGAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGCTCTTGGTAATAGGTGGTCTGTGATAGCAGGACATTTACCAGGACGAACGGACAATGAGATAAAGAACTACTGGAACTCTCATTTGAGGAGAAAGATTTACTGCTTCATGAGATCTTTAAATGACCAACAATCTCTCCCACCCATTGACATGAATGTAGCTACAAAATCCAAGAGAAGAGGTGGAGGAACAAGAAGCAAGCTACCTATGGAAGATGAAAACAACATGATGGCAGTGAGTTTGAGCCAAAACTCCCTTGAAACAATTCCTAAAAGGAAAGCTGCAATTTTCAATAGAGGAGAAGGTGATCAAGTTTCAATGATATTGGATGCTTGTGACCAAATGCAGCAGGGCAACATAAATAGTACAGCAGCTGCATCATACAACGCTAGTGTGAATGGAGATCATATTGAAGGCTTCGGCTTGGGACCATATCATGATGAAATTATGAAACTTGGTCACATGTTTGAAAATGGTATTGGTATTGGGAGCTCATCAATTGTAGAGAGTGAAGAGTGGCACACTACTCCTACTTCTGGTTGCTTGTCAGTGAATTCTATTTCTACCACAGATTTTCAGTGCTTTGATTGGGATTTGCAAGGTACTGTTCAATCTCATAATGAGTGGGACCTTTATGAAGAACAAGACCAAGTAGTCACTGGCTTGTGGGGTACTGGCATTGGTGAAATAAATGGTTTTCATCAGTTGTGA 960 0.4125 MGRAPCCEKVGLKRGRWSEEEDKILTDFIKQNGEGSWKSLPKNAGLLRCGKSCRLRWINYLREDVKRGNITSEEEEIIVKLHAALGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMRSLNDQQSLPPIDMNVATKSKRRGGGTRSKLPMEDENNMMAVSLSQNSLETIPKRKAAIFNRGEGDQVSMILDACDQMQQGNINSTAAASYNASVNGDHIEGFGLGPYHDEIMKLGHMFENGIGIGSSSIVESEEWHTTPTSGCLSVNSISTTDFQCFDWDLQGTVQSHNEWDLYEEQDQVVTGLWGTGIGEINGFHQL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2294 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja6g2294 319 SMART sant 66 114 IPR001005 -
Lja6g2294 319 SMART sant 13 63 IPR001005 -
Lja6g2294 319 CDD SANT 16 61 IPR001005 -
Lja6g2294 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja6g2294 319 Gene3D - 11 67 - -
Lja6g2294 319 Gene3D - 71 116 - -
Lja6g2294 319 PANTHER MYB TRANSCRIPTION FACTOR 2 257 - -
Lja6g2294 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja6g2294 319 CDD SANT 71 112 IPR001005 -
Lja6g2294 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja6g2294 319 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja6g2294 319 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 257 - -
Lja6g2294 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja6g2294 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2294 Lja-Chr6 51881743 51886943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2294 1 147 MYB Transcription Factor Family AT2G47460 68.627 9.78e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g2294 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2294 K09422 - lja:Lj0g3v0128909.1 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2294 6 51881743 51886943 Lja6g2294 6 51881743 51886943 ECH