Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2291 ATGAGTGCATCTAGAAACCCTATGCACAACACCAAGGAGAAAGCCTCCTCCTCCTCAAAAACACTGACGCTATTCCCCTTAACTCCTGCTCAGGCCCAAGCTCCTTGTGTGAACAAGCAGAAGCAGAGCATCAAATGCCGCTTCTGCGGCCGCGAATTCTCCAATTCTCAAGCGCTTGGTGGCCATCAAAATGCTCACAAGAGAGATCGTCAAAGAGCACACCACTTTCTTCCCATTCTCATCCCTCATCATCAACGGTTCATACCTACAGCAGCTTCCCCTAATCATATCATGGCGGTTGCACATGGGCTTGTTCCTCCTCGTGGATCACCAGCAGCTTCTCATGAACCGCCAGTAAGTGGTGCATGGGTCGCACAACCAGCTTTTGCCTATGTGATCCCTGATGATGAGGGGCCACCTTTTGTAACAAGACCAAATGGGGCAGGCACGTCAAGAACTACTGGGCCTTTCACACAACAAGTACAGAACCTTGATGGTGATGTTGATCTTAACTTGAGTCTAGCTAGTAGCTAG 534 0.4963 MSASRNPMHNTKEKASSSSKTLTLFPLTPAQAQAPCVNKQKQSIKCRFCGREFSNSQALGGHQNAHKRDRQRAHHFLPILIPHHQRFIPTAASPNHIMAVAHGLVPPRGSPAASHEPPVSGAWVAQPAFAYVIPDDEGPPFVTRPNGAGTSRTTGPFTQQVQNLDGDVDLNLSLASS* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2291 177 MobiDBLite consensus disorder prediction 139 164 - -
Lja6g2291 177 PANTHER ZINC FINGER PROTEIN 6-LIKE 7 177 - -
Lja6g2291 177 SUPERFAMILY beta-beta-alpha zinc fingers 42 71 IPR036236 -
Lja6g2291 177 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g2291 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Lja6g2291 177 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Lja6g2291 177 MobiDBLite consensus disorder prediction 146 164 - -
Lja6g2291 177 PANTHER ZINC FINGER PROTEIN 5 7 177 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2291 Lja-Chr6 51867518 51868051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2291 40 89 C2H2 Transcription Factor Family AT1G67030 49.057 1.62e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja6g2291 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2291 - - lja:Lj6g3v1537050.1 167.933