Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2290 ATGTCAGAAGGACTGCTGGAATCATCTGAAAATGGAACAGATTTGTCCCAGGATGACATTGGCACTGTTGAGGAAACACCGGAGGATACAATTTTGTCTAGACAAACTTCTGTCAATCTTGTTCCTTTTATTGGTCAAAGATTTGTCTCTCAAGAAGCTGCTTATGAATTTTACTGCAGTTTTGCTAAACAATGTGGCTTTTCTATTAGACGACACCGCACTCGAGGGAAAGATGGGGTTGGCCGGGGAGTTACAAGGAGGGATTTTACTTGCCATCGAGGTGGATTTCCCCAGTCTAAACCTTCTGATGAAGGGAAGATACAAAGGAACCGCAAATCGGCTCGCTGTGGTTGCCAAGCATATATGCGTATTGTGAGAAGGGCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACATCCACAATCATGAGTTGTTAAAATCCAATGAGTTGCGTCTGCTCCCTGCATACTGTCCAATATCTCCTGATGACAAGGGTCGGATATGCATGTTTGCTAAAGCTGGAATGTCGGTAAGACAAATGTTAAGACTAATGGAGCTAGAGAAGGGTATCAAACTTGGTTGTCTTCCATTTACAGAGGTAGATGTGAGAAACTTGTTGCAGTCTTTCAGAAATGTGGATAGAGATAATGATGCTATTGATCTGATTACTATGTGCAAGAGATTAAAAGATGAAAATCACAACTTCAGGTATGAATTCAAAATAGACAATAATAACAGGCTTGAGAATATTGCATGGTCCTACGCCTCATCCATTCAGTCATATGAGTCATTTGGAGATGCTGTGGTTTTTGATACAACCTACCGAGTGGAGGCTTATGACATGCTGTTGGGAATTTGGCTTGGAGTGGACAACAATGGAATGATATGTTCCTTTAGTTGTGCACTTTTACGGGATGAAAATATGCAATCTTTTACATGGGCTCTAAAGGCTTTCTTGGACTTCATGAAAGGAAAGGCTCCACAAACAATATTAACTGATCACAACACATGGCTGAAAGAAGCTATTGCTACTGAAATGCCTGAAACTAAGCATGGCTTTTGTATATGGCATATTCTTTCTAGGTTCTCAGACTGGTTTTCTTTACTTCTTGGATCACAATATGATGAGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAACTGGTGGAAGATTTTGAAGAAGGCTGGAGACAAATGGTAGAGAAATATGGACTCCATGCAAATAAACATATTATTAGCCTATATTCATTAAGGACATTTTGGGCTTTACCATTCTTGAGGCGATACTTCTTTGCAGGATTGACCAGCACATGTCAGTCTGAGTCCATCAATGCTTTCATCCAACGGTTCTTGAGTGCCCAATCTCAACCAGATCGCTTTTTAGAGCAAGTGGCTGATATTGTTGATTTTAATGACCGGACCGGAGCAAAGCAAAAGATGCAACGGAAACTTCAGAAAGTTTGCCTCAAAACAGGTTCACCTATTGAATCCCATGCTGCCACTGTACTAACTCCCTATGCCCTGAGTAAACTCCAGGATGAGCTAGTTTTGGCACCACAATATGCTTCCTTTCTGGTTGATGAAGGTTGTTTCCAGGTCAGGCACCACGCTCACACAGATGGAGGGTGCAAAGTATTTTGGGTTCCTTGTGAAGAGCACATCAGCTGCAGCTGCCATCTGTTTGAGTTTACAGGCATCTTATGCAGACACGTGCTACGCGTCATGTCAACTAATAACTGTTTTCACATCCCGGATCAGTATTTGCCTTCGCGTTGGCGAAGCACCGGTTTGTCGCCTACTAACCCCTTTCGGGGTACAAATAGCAGGGATCAGCCTGATAAGATACAATTTTTGGAGTCCATGGTTTCAACACTTCTAATGGAATCCATTGAGACCGAAGAGCGCCTCGACGTGGCTTGTGAGCAGGTTCCGATGGTGCTATCACAGATCAAAACCCTTCCCAGGTCAGCGCATGCGGTGAATGATATCACATACTGTTATCCATCAGATTCATTGATCCTGCCTGAGGTTGAAGACACTGATGAAATGATTCATGGTTTTGCAATTGAAAATCCACATGATTCTATGGCTTTAGGGAAGCTAAAGGAGAGAAGGGCAAGAGATGGAGTTGATCTCAGTAGGAAGCGTAGGCAGTTCTCAGCACCATTGTACGGACATGATGCATCTGATTGCTCTATAATGGCTAGTGATAATATAAGTGAAGATGCATTAGGGTATATGTAG 2259 0.4259 MSEGLLESSENGTDLSQDDIGTVEETPEDTILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQSKPSDEGKIQRNRKSARCGCQAYMRIVRRADFDVPEWRVTGFRNIHNHELLKSNELRLLPAYCPISPDDKGRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEVDVRNLLQSFRNVDRDNDAIDLITMCKRLKDENHNFRYEFKIDNNNRLENIAWSYASSIQSYESFGDAVVFDTTYRVEAYDMLLGIWLGVDNNGMICSFSCALLRDENMQSFTWALKAFLDFMKGKAPQTILTDHNTWLKEAIATEMPETKHGFCIWHILSRFSDWFSLLLGSQYDEWKAEFHRLYNLELVEDFEEGWRQMVEKYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSTCQSESINAFIQRFLSAQSQPDRFLEQVADIVDFNDRTGAKQKMQRKLQKVCLKTGSPIESHAATVLTPYALSKLQDELVLAPQYASFLVDEGCFQVRHHAHTDGGCKVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPSRWRSTGLSPTNPFRGTNSRDQPDKIQFLESMVSTLLMESIETEERLDVACEQVPMVLSQIKTLPRSAHAVNDITYCYPSDSLILPEVEDTDEMIHGFAIENPHDSMALGKLKERRARDGVDLSRKRRQFSAPLYGHDASDCSIMASDNISEDALGYM* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2290 752 SMART 26again6 559 586 IPR006564 GO:0008270
Lja6g2290 752 Pfam SWIM zinc finger 555 581 IPR007527 GO:0008270
Lja6g2290 752 MobiDBLite consensus disorder prediction 1 20 - -
Lja6g2290 752 ProSiteProfiles Zinc finger SWIM-type profile. 551 584 IPR007527 GO:0008270
Lja6g2290 752 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 5 735 - -
Lja6g2290 752 MobiDBLite consensus disorder prediction 1 26 - -
Lja6g2290 752 Pfam MULE transposase domain 272 364 IPR018289 -
Lja6g2290 752 Pfam FAR1 DNA-binding domain 56 149 IPR004330 -
Lja6g2290 752 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 5 735 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2290 Lja-Chr6 51847765 51852054 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g2290 MULE 3.1e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2290 - - gmx:100778434 1395.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2290 6 51847765 51852054 Lja6g2290 6 51847765 51852054 ECH