Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2287 ATGTCGCTCAGGCCCAATGCTAGGACCGAGATTCGCCGCAACCGCTACAAGGTTGCCGTCGACGCCGACGAAGGTCGCCGGAGGAGGGAGGACAACATGGTTGAGATCCGGAAGAGTAAGCGCGAAGAGAGCCTCCAGAAGAAGCGCCGTGAGGGTCTCCAAGCTCAGCAGCAGTTCGCCACTCCTCTTCAGTCTTCCTCCATTGTCGAGAAAAAGTTAGAGAGTCTTCCGGCGATGGTTGCTGGGGTTTGGTCGGATGATAATAGCCAGCAGCTGGAAGCAACTACTCAATTTCGGAAGCTGCTATCCATTGAGCGTAGCCCTCCGATTGAGGAAGTTATCCAATCTGGTGTTGTGCCGCGTTTTGTTGAGTTTCTCGTTAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGTGGGCTCTCACCAACATTGCGTCCGGGACTTCGGAGAACACTAAGGTGGTAATTGATCATGGGGCAGTACCGATATTTGTCAAGCTGCTTAGTTCGCCTAGTGATGATGTTCGCGAGCAGGCGGTGTGGGCGTTGGGAAATGTTGCTGGTGATTCTCCTAGGTGTCGAGATCTAGTGCTCAGCCATGGTGCCCTGATCCCATTGTTGTCCCAGCTGAATGAGCATGCCAAACTTTCAATGCTGAGAAACGCCACGTGGACCTTGTCAAACTTCTGCAGGGGCAAGCCTCAGCCTCCATTTGAACAGGTGAGGCCAGCGCTTCCAGCTCTTGAGCGTTTGGTTTTTTCCAATGATGAAGAGGTCCTGACTGACGCATGCTGGGCGCTATCTTATCTTTCCGATGGAACAAACGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTAGCAGATTGGTTCAGCTTCTTCTGCACCCGTCTCCTTCCGTGCTGATTCCTGCACTTCGCACAGTGGGAAATATTGTTACTGGAGACGATATGCAGACTCAGGCTATTATCAATCATGGTTCACTCCCGTGCCTTTTGAGCCTGTTGACGCAAAATCATAAAAAAAGTATCAAGAAAGAAGCTTGCTGGACTATATCAAACATTACAGCTGGAAACAAAGAGCAGATACAGTCTGTTATTGAAGCGGGTCTGATTGCTCCCCTTGTTAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAGGAAGCTGCTTGGGCAATTTCGAATGCTACATCTGGCGGTACCCATGAGCAGATCAAGTACTTGGTGAGCCAGGGTTGCATCAAGCCTCTCTGTGATCTGCTTGTTTGTCCCGACCCAAGAATCGTTACTGTCTGTTTAGAAGGTCTTGAGAACATTCTGAAGGTTGGGGAGGCTGACAAGAACTTGGGTAACTCTGGAGATGTCAACTTGTATGCTCAGTTGATAGATGAAGCTGAGGGATTGGAAAAGATTGAAAACCTGCAGAGCCATGACAACAATGAAATATATGAGAAGGCTGTTAAAATCCTCGAGACATATTGGTTGGAAGATGAAGATGAGACTTTGCCTCCAGGTGAAGGTGCTCAACCTGGGTTTAATTTTGGAACCAACGAGCTTCCAGTCCCATCCGGTGGATTCAACTTCAGTTGA 1596 0.4875 MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFATPLQSSSIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQAIINHGSLPCLLSLLTQNHKKSIKKEACWTISNITAGNKEQIQSVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKNLGNSGDVNLYAQLIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPPGEGAQPGFNFGTNELPVPSGGFNFS* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2287 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 399 IPR000225 GO:0005515
Lja6g2287 531 PIRSF Importin_alpha 2 530 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lja6g2287 531 PANTHER IMPORTIN ALPHA 2 522 - -
Lja6g2287 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Lja6g2287 531 PANTHER IMPORTIN SUBUNIT ALPHA 2 522 - -
Lja6g2287 531 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Lja6g2287 531 Gene3D - 11 50 IPR036975 GO:0006606
Lja6g2287 531 Pfam Importin beta binding domain 12 96 IPR002652 GO:0006606|GO:0061608
Lja6g2287 531 SUPERFAMILY ARM repeat 12 502 IPR016024 -
Lja6g2287 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Lja6g2287 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Lja6g2287 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 371 IPR000225 GO:0005515
Lja6g2287 531 Pfam Atypical Arm repeat 458 504 IPR032413 -
Lja6g2287 531 Gene3D - 74 497 IPR011989 -
Lja6g2287 531 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Lja6g2287 531 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Lja6g2287 531 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Lja6g2287 531 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Lja6g2287 531 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Lja6g2287 531 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Lja6g2287 531 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Lja6g2287 531 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Lja6g2287 531 SMART arm_5 275 315 IPR000225 GO:0005515
Lja6g2287 531 SMART arm_5 149 189 IPR000225 GO:0005515
Lja6g2287 531 SMART arm_5 190 232 IPR000225 GO:0005515
Lja6g2287 531 SMART arm_5 106 147 IPR000225 GO:0005515
Lja6g2287 531 SMART arm_5 360 400 IPR000225 GO:0005515
Lja6g2287 531 SMART arm_5 317 358 IPR000225 GO:0005515
Lja6g2287 531 SMART arm_5 403 443 IPR000225 GO:0005515
Lja6g2287 531 SMART arm_5 234 273 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2287 Lja-Chr6 51838134 51841998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2287 132 392 U-box Gene Family AT3G46510 25.191 7.03e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2287 K15042 - gmx:100808498 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2287 6 51838134 51841998 Lja6g2287 6 51838134 51841998 ECH
Lja6g2287 6 51838134 51841998 Lja5g1395 5 13982647 13987329 ECH
Lja4g1333 4 11932694 11937994 Lja6g2287 6 51838134 51841998 PCT