Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2285 ATGGCCTTCTCAAATGTGTATAGTTGCTGCTGCTTCTTCTTCTTCTCCCTCGCTGTCCTTGCCATCTTCGCCGCCGCGCCCACGATGTCTCAGCCGCAGACCTGCAACGGGATATTCCTGTCCTACGTGTACACCGGCGGGAGGCAGCTTCCGCCGGTGTTATCCGACCCTACGCAGCAACCGTACCGGTTCGAGTCGACATTGACGGTGATCAACAATGGACTAGAGGAGCTCAAGTCATGGAGTGTCTTCTTGGGGTTTCAGCACCGGGAGTGGTTGGTGTCCGCGTCTCACGCGGTGCTTGCAGACGGCACTAGCCTCCCTGGCCACGTCGGGAATGGCACTGTTTTAGCTGGGTTGGCTGTGAAGGATCTGAAGACGGCAGCGGAGACTGCAGGGGACGTGAGCCAGATGCAGGTTCGGGTGGAAATGGTGGGGACACAGGTGGGAGTGGCGCCACCGAGTGTGCCCATGCCTTCCAGCCTAAGAGTGGCTAATGATGGGTTCTTGTGTGGTGAACCCACCCGTCAAGGGACCAATGAGACTCATGTGTGTTGCACAAGTGATCCCACTTTCAAATCAAACATCACCACAGACTTAGAGTTCCAACCCCAACAGAATGGTGATGTTACCATCACATATGATGTGATCCAAGCTTATGATTCCAATTACTTAGCAGAGGTTACAATTGCCAACCACAACCCCCTAGGCCGTATTGACAACTGGAAACTAAGCTGGAAATGGAACAATCAAGAGTTCATACACACAATGAAAGGTGCTTATCCATCAGAAGTAGACTCTTCTGAATGTGTCCTTGGTCCTCAAGGTGTGTTCTACAAGGACCTTGACTTCACCAATGTGTTGAACTGTCAAAGAAGACCGACCATCATTGATCTCCCTCGCACAAGGTTCAATGATTCAGACCTTGGCAAAATCCCTTTTTGCTGCAGGAATGGCACCTTGCTTCCACCATCAATAGACCCTAGCAAGTCAGTTTCAAGGTTCCAAATGCAGGTCTTCAAAATGCCGCCAAACGTTAACCGCTCCAACCTCGCTCCGCCACATAACTGGGAGATCAAAGGTGAAGCCCTCAATCCTGATTACAAATGCGGTAACCCGATCCGGGTTAGTCCTAGTGAATCTCCAAACCCAAGAGGGTTACAATCAAACATATCTGCAATTGAAACTTGGCAGATTGTGTGCAACATAACAAGGTCAAATACAGCCCCTAAATGTTGTGTATCATTTTCAGCATATTACAATGAATCTGTTATTCCTTGCAATACATGTGCATGTGGGTGCCCTAGTAACCAAGACAGAACATGCAGCACTTCTGCACCTGCTATGTGGCTCCCAGCAGATGATGCACTACTTGTTCCTTTCGAGAATCGAAGTAAAAAGGCGGTTACTTGGGCTGACATGAAAGATCTACCAGTGCCAAACCCTATGCCATGTGGTGATAACTGTGGTGTGAGCATAAACTGGCATGTGCATACTGATTACCATAGAGGTTGGACTGCAAGGATCACACTTATTAACTGGGGTGAGACAGAGTTTGCAGATTGGTTTGCTGCCGTAGAAATGGACAAAGCTGCAGCAGGTTTTGAAGAAATGTATTCATTCAATGCAAGCACCTTAGGGAGCATGAACAATACAATATTCATGCAAGGTAAGCTGGGATTGAATTATCTTGCAGCAGAAACAGATGGACATGATCCTAGAAGAGATCCTAGGGTGCCCGGGAATCAGCAATCAGTGATCTTATTCACTAAGAAAACTACTCCTGGAATCAATGTGGTTGGTGGTGATGGGTTTCCCAGTAAAGTCTTCTTCAATGGAGAAGAATGTTCTCTTCCTTCAGTGTATCCTAGCAGTGGTTTCAGGAGGGAGTTTTCATTGGCTACTATAATGTTCATAATACTGTCGCCGATCATTTTGATGCGGCAATAG 1950 0.4785 MAFSNVYSCCCFFFFSLAVLAIFAAAPTMSQPQTCNGIFLSYVYTGGRQLPPVLSDPTQQPYRFESTLTVINNGLEELKSWSVFLGFQHREWLVSASHAVLADGTSLPGHVGNGTVLAGLAVKDLKTAAETAGDVSQMQVRVEMVGTQVGVAPPSVPMPSSLRVANDGFLCGEPTRQGTNETHVCCTSDPTFKSNITTDLEFQPQQNGDVTITYDVIQAYDSNYLAEVTIANHNPLGRIDNWKLSWKWNNQEFIHTMKGAYPSEVDSSECVLGPQGVFYKDLDFTNVLNCQRRPTIIDLPRTRFNDSDLGKIPFCCRNGTLLPPSIDPSKSVSRFQMQVFKMPPNVNRSNLAPPHNWEIKGEALNPDYKCGNPIRVSPSESPNPRGLQSNISAIETWQIVCNITRSNTAPKCCVSFSAYYNESVIPCNTCACGCPSNQDRTCSTSAPAMWLPADDALLVPFENRSKKAVTWADMKDLPVPNPMPCGDNCGVSINWHVHTDYHRGWTARITLINWGETEFADWFAAVEMDKAAAGFEEMYSFNASTLGSMNNTIFMQGKLGLNYLAAETDGHDPRRDPRVPGNQQSVILFTKKTTPGINVVGGDGFPSKVFFNGEECSLPSVYPSSGFRREFSLATIMFIILSPIILMRQ* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2285 649 Pfam COBRA-like protein 224 404 IPR006918 GO:0010215|GO:0031225
Lja6g2285 649 PANTHER COBRA-LIKE PROTEIN 7 5 647 - -
Lja6g2285 649 PANTHER COBRA-LIKE PROTEIN 7 5 647 - -
Lja6g2285 649 SUPERFAMILY Carbohydrate-binding domain 205 254 IPR008965 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2285 Lja-Chr6 51814382 51816800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2285 35 633 COBRA Gene Family AT4G16120 63.306 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2285 - - gmx:100778971 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2285 6 51814382 51816800 Lja6g2285 6 51814382 51816800 ECH
Lja4g1331 4 11895089 11897791 Lja6g2285 6 51814382 51816800 PCT