Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2284 ATGAATGCCAAGGGACCCATCATGTCAACCCCCACTTCAAGTTCAGCATCAAAGTCCAGCGACACCGCCGCCGTCACCGCCGCCGACCAGTTTCCGGCGGGTCTTCGTGTACTTGTTGTTGATGATGACCCTACATGTCTTGTGATCCTTGAGAGGATGCTCCGTGCTTGCCTCTATGAAGTCACGAAATGCAAGCGAGCAGAGGTTGCATTGTCGCTTCTGAGAGGGAACAAGAATGGATTCGATATTGTTCTAAGCGATGTGCATATGCCAGACATGGATGGATTTAAGCTTTTGGAGCATATTGGATTGGAGATGGACCTTCCGGTTATTATGATGTCTGCTGATGATGGAAAAGATGTGGTGATGAAGGGTGTGACTCACGGTGCTTGCGATTACCTGATTAAACCCGTGCGAATTGAGGCTTTGAAGAATATTTGGCAGCATGTGGTTCGCAAGAGGAAGAATGACGGGAAAGATCCGGATCAATCAGGTGGAGGGGACGAAGGAGATCAGCAGCTTAAGGGATCTGATGATGCAGATTACTCATCCTCAGCAAATGAATGCAAAAGCACAAAGAAGAGGAGGGATCAGGAAGATGAGGATGCAGAGGACAGGGATGATTCTTCCTCGTTAAAGAGGCCGCGGGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTCATGGCTGCTGTGAATAACCTTGGAATTGATAAGGCTGTTCCTAAAAAGATTCTGGAAATAATGAATGTTCCTGGGCTCACTAGAGAAAACGTTGCTAGCCACCTCCAGAAATACCGGTTGTATCTTCGAAGAGTGAGTGGAGTTTCTCAGCCGCAAAATAACTTGAACAGCTCCTTCATCAGTCCATACGAGTCAGCATATAATGCATCTTCAATAAATGGAATTGATCTTCAAACTATTTCGGCACACAGTCTAGCTAAGCTTCAAGCAGGACTTGGCAGGTCAACTGCAAAAGTGGGTGTGCCCATGCCTCTAGTTGAGCAAAAGAACCTTTTCAGTTTCGAAAACTCAAAACTAAGATTTGGAGAAGGTCAACTGCAACATATGAGCAGCAATAAACCAATGAACTTGCTTCATGGAATCCCTACCAACATGGAGCCAAAGCAGTTTGCTCATTGGCACCAGTCTACCCAGTCGCTTGGTAACTTGAATATGCGATTCAATGCTTCTGCTGCTCAGAGGAACCCCTTTTTGATGCAGATGAATCATTCTCAACCAAGAGGTCAGATGCTAGGTGAAAATACTGGATCTCATATTACCAGGTTTCCGTCATCTTTGGTGCAGCCTTCTGGACCAAATGGAATTTCTAATGGTGCTATAGAAAATGGGATTACTGATACCAACAACATAACTCCACAAAGGTCTTCATTGTTGAGTTTTCCCATGAACCAAACCACTGATATCTCAGCCAGTAGTTTCCCCCTTCGAAGCACTCCAGGTATATCCAACATCACTACAAAAGGCATGTTTCATGAGGAAGTTACTTTGGGAACTAAAGGATCTGGTGGATTTTTTCCAAGTTATGATATTTTTAATGAACTCCATCAGAAGTCTCATGATTGGGACCCAACAAACAGTGGACTGACATATGATGCTTCTCAGCATACAAATCCTTTACAAGGCAGCTTTGACGTCTTGCCATCAATCTTAGGCCATCAGGATTTTTCTTCTGCCCAACAGACTGCAGAAAATAGAGATACTACTTTGATTGGAAAAGGTATGGTCTCCATGGGCGATAGCATGAATCTAGGTAATCTCCAAAATGTTGGTCAACACCACCTCAATACATCTCTTATTGACAATTCAGCAAGGGTTAAGGCAGAAAAGTTTCCTGATCCAAGCTCCCAGAATAACCTCTTCCTTGAGCAATATGGGCAGGATGATCTCCTGAGTGAACTTCTGAAACAGCAGGAAGGCATCGGAGTCGGACCAATTGAAAACGAGTTTGATTTTGATGGATATTCCATGGACAACATTCCGGTCTAG 2007 0.4434 MNAKGPIMSTPTSSSASKSSDTAAVTAADQFPAGLRVLVVDDDPTCLVILERMLRACLYEVTKCKRAEVALSLLRGNKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKDVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNDGKDPDQSGGGDEGDQQLKGSDDADYSSSANECKSTKKRRDQEDEDAEDRDDSSSLKRPRVVWSVELHQQFMAAVNNLGIDKAVPKKILEIMNVPGLTRENVASHLQKYRLYLRRVSGVSQPQNNLNSSFISPYESAYNASSINGIDLQTISAHSLAKLQAGLGRSTAKVGVPMPLVEQKNLFSFENSKLRFGEGQLQHMSSNKPMNLLHGIPTNMEPKQFAHWHQSTQSLGNLNMRFNASAAQRNPFLMQMNHSQPRGQMLGENTGSHITRFPSSLVQPSGPNGISNGAIENGITDTNNITPQRSSLLSFPMNQTTDISASSFPLRSTPGISNITTKGMFHEEVTLGTKGSGGFFPSYDIFNELHQKSHDWDPTNSGLTYDASQHTNPLQGSFDVLPSILGHQDFSSAQQTAENRDTTLIGKGMVSMGDSMNLGNLQNVGQHHLNTSLIDNSARVKAEKFPDPSSQNNLFLEQYGQDDLLSELLKQQEGIGVGPIENEFDFDGYSMDNIPV* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2284 668 MobiDBLite consensus disorder prediction 188 211 - -
Lja6g2284 668 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 270 IPR017930 -
Lja6g2284 668 MobiDBLite consensus disorder prediction 154 176 - -
Lja6g2284 668 Gene3D - 211 273 - -
Lja6g2284 668 MobiDBLite consensus disorder prediction 154 211 - -
Lja6g2284 668 ProSiteProfiles Response regulatory domain profile. 36 151 IPR001789 GO:0000160
Lja6g2284 668 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 639 IPR045279 GO:0009736
Lja6g2284 668 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 215 267 IPR006447 GO:0003677
Lja6g2284 668 PIRSF RR_ARR_type-B 12 663 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lja6g2284 668 SUPERFAMILY Homeodomain-like 212 271 IPR009057 -
Lja6g2284 668 Pfam Myb-like DNA-binding domain 216 266 IPR001005 -
Lja6g2284 668 Pfam Response regulator receiver domain 37 145 IPR001789 GO:0000160
Lja6g2284 668 CDD REC_typeB_ARR-like 37 151 - -
Lja6g2284 668 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g2284 668 Gene3D - 35 164 - -
Lja6g2284 668 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 639 - -
Lja6g2284 668 SUPERFAMILY CheY-like 34 154 IPR011006 -
Lja6g2284 668 SMART REC_2 35 147 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2284 Lja-Chr6 51809881 51814238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2284 69 668 Response Regulator Gene Family AT3G16857 45.191 3.48e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja6g2284 Response_reg 1.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2284 - K14491 gmx:100809583 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2284 6 51809881 51814238 Lja6g2284 6 51809881 51814238 ECH
Lja4g1330 4 11887840 11892786 Lja6g2284 6 51809881 51814238 PCT