Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2265 ATGGTTCTTTTTCCATCTTTTGTCAACGGGTTGGCGAGAACCGTGTCGTTGAAGAAAGAGAAGAGTCGCGGAAAGAATGAAGGAAGAAAAGTTGTGAAATCATTGATAAAGGAAGCAAGGAAAAATGAGTTGTTACTGAGTACATCTGGAATTGTTAAGTCTTCCAAGGGCAACAATTTTGCCTGTGTGTTCACTAAACAAGGCCAAAAAGGAGTCAATCAGGATTGCCTTATTGTTTGGGAGGAATTTGGTTGCCATGAAGACATAACCTTCTGTGGGATTTTTGATGGACATGGCCCTTGGGGACACTTTGTAGCCAAAAGGGTAAGGAAACTAGTACCTGCCTCTTTGCTATGCAATTGGCAGGAAAATCTGGCTGCATCAACACAACTTGACCTGGATTTTAAAATGGAAGAAGACATGAACCTTCATAGATTTGACACGTGGAAGCAGTCCTACATAAAGACTTTTGCTGCAATTGATCAGGATCTTAAGCAGCAGACTGGGATTGATTCCTTTCAAAGTGGTACAACAGCTTTGACAATCATCAAACAGGGTGAACATCTCATTCTAGCAAATGTTGGTGATTCTAGGGCGGTGTTGGCAACCACTTCAGAGGATGGAACATTAACTGCACTTCAGCTAACCACTGACTTGAAGCCAAATTTACCAAAGGAGGCAGAGCGCATAACACAATCCAAAGGGCAGGTATTTTGTTTAGAAGATGAACCAGGAGTGTACAGGGTGTGGATGCCAAATGGTAGAAAAGCTGGACTTGCAATATCTAGAGCATTTGGTGACTACTGTTTAAAAGACTTTGGAATAATCTCTGTGCCAGAAGTCACACAAAGAAACCTGAACCCCATGGATCAATTTGTCATCTTGGCAACAGATGGGGTATGGGATGTTATTTCAAACCAAGAAGCAGTTAGAATCGTTTCTTCAACTCCAAATAGAGAAAAAGCAGCTAAAAGGCTCGTGAAATGTGCCACATATGAATGGAAACGTAAGAGAAGAGGCATTGCTATTGATGATATATCAGCTGTTTGCCTCTTCTTTCGCTCTCCCTCTCCCAAGTACTCTAACCAACTTCCAACCGCTAAAGTTGTCAAATTAGGGTGTTGA 1125 0.4178 MVLFPSFVNGLARTVSLKKEKSRGKNEGRKVVKSLIKEARKNELLLSTSGIVKSSKGNNFACVFTKQGQKGVNQDCLIVWEEFGCHEDITFCGIFDGHGPWGHFVAKRVRKLVPASLLCNWQENLAASTQLDLDFKMEEDMNLHRFDTWKQSYIKTFAAIDQDLKQQTGIDSFQSGTTALTIIKQGEHLILANVGDSRAVLATTSEDGTLTALQLTTDLKPNLPKEAERITQSKGQVFCLEDEPGVYRVWMPNGRKAGLAISRAFGDYCLKDFGIISVPEVTQRNLNPMDQFVILATDGVWDVISNQEAVRIVSSTPNREKAAKRLVKCATYEWKRKRRGIAIDDISAVCLFFRSPSPKYSNQLPTAKVVKLGC* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2265 374 ProSiteProfiles PPM-type phosphatase domain profile. 60 353 IPR001932 -
Lja6g2265 374 CDD PP2Cc 59 353 IPR001932 -
Lja6g2265 374 Pfam Protein phosphatase 2C 80 330 IPR001932 -
Lja6g2265 374 Gene3D - 47 355 IPR036457 -
Lja6g2265 374 PANTHER PROTEIN PHOSPHATASE 2C 41-RELATED 1 360 - -
Lja6g2265 374 SUPERFAMILY PP2C-like 57 355 IPR036457 -
Lja6g2265 374 PANTHER ALPHABET, ISOFORM E-RELATED 1 360 - -
Lja6g2265 374 SMART PP2C_4 51 351 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2265 Lja-Chr6 51537885 51540592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2265 1 354 PP2C-type Phosphatase Gene Family AT3G05640 59.551 4.21e-159 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2265 - - gmx:100817397 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2265 6 51537885 51540592 Lja6g2265 6 51537885 51540592 ECH