Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2263 ATGTGTGGAGGTGCTATCATCTCAGACTTCATTGCTGTCAAGCGTGGCCGCAACCTTGCCCCACAGGAGATATGGTCTGAGCTTGATCCTTTCTCTGATTTTGCTGCCTTTGATGCTGCTTCTGCTGGTGCTGCTGTTTCCACCACCCCAACTTCCAAATCCTCCTCACCACCCCTCAACTTTGATGATGTGATTCAAGTCCCTGACCAAAAAGTGGCAGGATGTGACAAGAAAGGTGAGAAGAAGAAAAGCGTGGTGGGTTCTGGTGGTGCAGGGAAGAAGAACGCTCGCAAGAACGTGTACAGAGGAATCAGGCAGAGGCCATGGGGCAAGTGGGCCGCTGAGATAAGGGACCCACAAAAGGGTGTCCGTGTCTGGCTCGGCACTTTCCCCACCGCCGAAGAAGCTGCCAGAGCCTATGACGAAGCCGCCAAGCGCATCCGCGGTGACAAGGCCAAGCTCAATTTCCCTGACACCGTGGCGGCTCCGCCTCCTACCAAGAAGCAACGCTGCCTCAGCCCTGAGCAGCCGGAGTACAGCTCCTCCGGCAGCTCCGGGCCCACCACCACCACCACCGGGTCCTCTGACAGCTCCGCACCCATCATCACCACCGGGCTCGAGGATCAGCCTAACCTGAAGCTGCAAATCTCTGACATTGAGTGGTTTTTGGGCCTCGACAATGAGCCAGTCCAGGCCCAAGCCCAGATCCAGGCCCAGGCTGAGCCTCTGCCTGGTGGTGATGCTGAGTGGGAGAGCGATTTCATGGACCTGTGGATGCTTGACGACGTCGTCATGACTAACCGTCACCCGGTTTACTAG 819 0.5714 MCGGAIISDFIAVKRGRNLAPQEIWSELDPFSDFAAFDAASAGAAVSTTPTSKSSSPPLNFDDVIQVPDQKVAGCDKKGEKKKSVVGSGGAGKKNARKNVYRGIRQRPWGKWAAEIRDPQKGVRVWLGTFPTAEEAARAYDEAAKRIRGDKAKLNFPDTVAAPPPTKKQRCLSPEQPEYSSSGSSGPTTTTTGSSDSSAPIITTGLEDQPNLKLQISDIEWFLGLDNEPVQAQAQIQAQAEPLPGGDAEWESDFMDLWMLDDVVMTNRHPVY* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2263 272 MobiDBLite consensus disorder prediction 155 206 - -
Lja6g2263 272 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Lja6g2263 272 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Lja6g2263 272 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Lja6g2263 272 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Lja6g2263 272 SUPERFAMILY DNA-binding domain 100 158 IPR016177 GO:0003677
Lja6g2263 272 MobiDBLite consensus disorder prediction 173 206 - -
Lja6g2263 272 PANTHER EREBP TRANSCRIPTION FACTOR 1 181 - -
Lja6g2263 272 PANTHER DNA-BINDING DOMAIN 1 181 IPR044808 GO:0003700|GO:0009873
Lja6g2263 272 Gene3D AP2/ERF domain 100 158 IPR036955 GO:0003700|GO:0006355
Lja6g2263 272 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
Lja6g2263 272 MobiDBLite consensus disorder prediction 76 95 - -
Lja6g2263 272 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2263 Lja-Chr6 51518967 51520906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2263 1 266 AP2-EREBP Transcription Factor Family AT3G16770 40.767 4.54e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja6g2263 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2263 K09286 - gmx:100817253 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2263 6 51518967 51520906 Lja6g2263 6 51518967 51520906 ECH
Lja4g1312 4 11716343 11717939 Lja6g2263 6 51518967 51520906 PCT