Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2255 ATGAGGGGCAAAGTGAAGTTTGCTGTCTTTGGGAACTATGTTGATATGGTGAAGCAGTTTATTGCTACTGATGGAGTTGGGTTACCTGTTGTTGTTGTGCAGTTTGCGAAGATTAAGTCTTTCAGGGGTGATGTTGTTGTCCAAAATGTTATGAATGCTACGAAGATCTTGTGGAATGCTGATATACCTGAAGTGGCTTTGTTTCGGAATGGGTTGGCTGAACATGGTATTGATGTTGATATTCCCCTCGGTGAGCTTGATGATGGTTTTCATCATGTCCCCATTGATGAGGAGTTCCTAACAATGTTTCCTAGGAAGACTATATCTGAGTTACATTCAACTGAAGAGGAGGGTATATTCATAGTATGGGCTAAAATCGAAGGTATACTTGATGGGGAGAAATGGTGGTATACATCTTGCCGCTGCCACAAATCTGTAAGCATTCAAGATGGCATGTATTACTGTTCTGGTTGTGCAACATTTGTTCTTGAAGTGATACCAAGGTTCAAGATCAAGTTGGATGTTTCTGATGGTGAAGAAAATGCCACCTTTTTGTTGTTTGACTCTGATGCTGAACACATTCTTCAAAAATCCTGCAAGGATTTGGTTGCCAGTTCTAAGGGTAAAAGTGTCAATGAATACCCGGCTGCTGTGAAGGAGATTGTTGGGAATGATTTTCTATTCAAAGTTGAGAGGTCATCTGACCAGGGAGTGAATTTTGATGATTCATTTAAAGTGAAGAAGATTTGTGATGTCACTACTGTTTTTGAAATGTTCAAGGACAAAACAAAAGTGCTGACTCCTAAGAAGTCTATCACAAAGGTGTTTGTATCCGAACATGCTTCTGGATCTAAAGATGTGGATTTGAGGGACAATGTAGAAGAGTGTTCTGGGGATATGTCAGATATTCGTGGGAGCATAGTGTCGCTGGATGACATCTCTTCTGGTGAAGGTTCTTCTGTGGTTTCTTCTGTTAAGAATGTTCGTAGTGGTGATGCAATTACATCCAAGCCTGCAAAGAGGATGAGGATAAGAAAAGTCAAGTTAGATTTGTAG 1056 0.4034 MRGKVKFAVFGNYVDMVKQFIATDGVGLPVVVVQFAKIKSFRGDVVVQNVMNATKILWNADIPEVALFRNGLAEHGIDVDIPLGELDDGFHHVPIDEEFLTMFPRKTISELHSTEEEGIFIVWAKIEGILDGEKWWYTSCRCHKSVSIQDGMYYCSGCATFVLEVIPRFKIKLDVSDGEENATFLLFDSDAEHILQKSCKDLVASSKGKSVNEYPAAVKEIVGNDFLFKVERSSDQGVNFDDSFKVKKICDVTTVFEMFKDKTKVLTPKKSITKVFVSEHASGSKDVDLRDNVEECSGDMSDIRGSIVSLDDISSGEGSSVVSSVKNVRSGDAITSKPAKRMRIRKVKLDL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2255 351 SUPERFAMILY Nucleic acid-binding proteins 103 237 IPR012340 -
Lja6g2255 351 PANTHER REPLICATION FACTOR A 1, RFA1 10 203 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja6g2255 351 Gene3D - 101 261 IPR012340 -
Lja6g2255 351 CDD RPA1_DBD_C 106 254 IPR013955 -
Lja6g2255 351 Pfam Replication factor-A C terminal domain 123 246 IPR013955 -
Lja6g2255 351 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 10 203 - -
Lja6g2255 351 Gene3D - 1 80 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2255 Lja-Chr6 51475788 51480170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2255 29 236 Core DNA Replication Machinery Family AT5G08020 23.744 5.09e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2255 - - lja:Lj3g3v3527180.1 372.859