Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2250 ATGAATGCACCCAAGAGTGGGCGTGATTCTAAGAACAAGAGGTTCCTCCTCCTCGGCGTCTCCTCCATCCTTCTGGTTGCGATGGTGGCTGCGGTCGCGGTTGGCGTCAGCCGCGTACCCCCCAAAGGGGAAGAAGGGCACTCTCCGGGGAGCGGCCAAATCAGCAGCAATCAGAGGAATGTAGATATGCTCTGCCAATCAACAGAGTATAAACAAACCTGCCACAAAAGCCTTAAAAAAGCATCAAACCAAACCACAGACATCAAAGAGCTTGTGAAAACCGCGTTCAACACAACAGCAGAGGAATTGTTAAAGCACATACACAACTCCACCCTCTACCATGAGCTAGCAAAAGACAACATGACAAGACAAGCCATGGACATATGTAACGAGGTCTTAAGCTATGCTGTTGATGGAATTCACAAATCCATTGACAATTTGGACAAATTTGAATTCAGCAAGTTGAGTGAATATGCTTATGATCTCAAGGTTTGGCTCACCGGCACACTTACTCACCAGCATACATGTTTGGATGGGTTTGAGAACACGACGACGGAAGCAGGGAAGACCATGGCTAAGGCTCTAAACATGTCTATGCAGCTGAGTAGCAATGCAATTGACATGGTCAATGCTGTGTCAACCATGCTTAATGATTTGAACCTGGACGCTCTTGTGGGTAGCAGCAGTAGGAGGTTGCTTTCAGAGGAAGCGCCGTTTGTGGATGGTTTTCCGTCGTGGGTGAATGAGGGGCAGAAGCGGCTTCTGCGGGCTGCTGGGCCGGGGAACGTGAAGCCGAACGTGATTGTGGCACTTGATGGGAGTGGACAGTTCAAGACGCTTGGGGAGGCTCTTAAGACTGTTCCGCCGAAGAATGCACATCCTTTTGTGATTCATGTGAAGGCTGGTGTGTATAAGGAGATTGTGAATGTGGGGATAGATATGACACATGTTACTATCATTGGAGATGGTCCTAAAAAGACTATATTTAGTGGTAGCCAAAACTATGTTGATGGGGTCCAGACATATAACACAGCAACCTTCGGAGTGAATGCTGCTAACTTCATGGCAAAGGACATCGGTTTCGAGAACACAGCAGGATCAGAAAAGCACCAAGCAGTGGCACTCCGAGTAACAGCAGACCAAGCAGTGTTCCACAACTGCGCAATGGACGGCTTCCAAGACACCCTCTACGTCCAATCCCAACGCCAATTCTACCGCGACTGCACCATCACCGGCACCATTGACTTCGTCTTCGGCGACGCCTTCGGAGTCTTCCAGAACTGCAAGCTCATCGTCCGAAAGCCCTCCGTCGAATCCCAACAATGCCTCGTCACCGCCGGCGGAAGAACAAAAGCCGACAGCCCCAGTGCCCTTGTCTTCCAGAGCTGCCACTTCTCCGGCGAGCCTGACGTGGCAAGGTTAAAGACCAAAATATCCTTCCTCGGACGACCATGGAGAGCGTTCTCCAAAGTTGTCATCATGGATTCAATCATTGATGATGTTTTCTCACCAGAAGGTTACATGGCATGGATGGGAAGTGCTAACAAGAACACATGTACGTATCTTGAGTATAATAACAAGGGTCCTGGTGCTAACACGAAAGCAAGGGTAAAGTGGCCTGGTGTGAAGACTATCACTTCTTCTCAAGCAGCTGATTACTATCCAGGAAAGTTCTTTGGGCTTGTGAATTCCACTGAGCGTGATGCTTGGATTGTTACCTCTGGGGTGCCTTACTCCCTTGGTCCTATGGCTGCTAAAATGTAG 1764 0.4915 MNAPKSGRDSKNKRFLLLGVSSILLVAMVAAVAVGVSRVPPKGEEGHSPGSGQISSNQRNVDMLCQSTEYKQTCHKSLKKASNQTTDIKELVKTAFNTTAEELLKHIHNSTLYHELAKDNMTRQAMDICNEVLSYAVDGIHKSIDNLDKFEFSKLSEYAYDLKVWLTGTLTHQHTCLDGFENTTTEAGKTMAKALNMSMQLSSNAIDMVNAVSTMLNDLNLDALVGSSSRRLLSEEAPFVDGFPSWVNEGQKRLLRAAGPGNVKPNVIVALDGSGQFKTLGEALKTVPPKNAHPFVIHVKAGVYKEIVNVGIDMTHVTIIGDGPKKTIFSGSQNYVDGVQTYNTATFGVNAANFMAKDIGFENTAGSEKHQAVALRVTADQAVFHNCAMDGFQDTLYVQSQRQFYRDCTITGTIDFVFGDAFGVFQNCKLIVRKPSVESQQCLVTAGGRTKADSPSALVFQSCHFSGEPDVARLKTKISFLGRPWRAFSKVVIMDSIIDDVFSPEGYMAWMGSANKNTCTYLEYNNKGPGANTKARVKWPGVKTITSSQAADYYPGKFFGLVNSTERDAWIVTSGVPYSLGPMAAKM* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2250 587 TIGRFAM PME_inhib: pectinesterase inhibitor domain 56 210 IPR006501 GO:0004857
Lja6g2250 587 Pfam Pectinesterase 266 558 IPR000070 GO:0030599|GO:0042545
Lja6g2250 587 ProSitePatterns Pectinesterase signature 1. 291 310 IPR018040 -
Lja6g2250 587 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Lja6g2250 587 Gene3D - 263 583 IPR012334 -
Lja6g2250 587 PANTHER PECTINESTERASE 9 584 - -
Lja6g2250 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 213 IPR035513 -
Lja6g2250 587 PANTHER PECTINESTERASE 9 584 - -
Lja6g2250 587 Pfam Plant invertase/pectin methylesterase inhibitor 61 208 IPR006501 GO:0004857
Lja6g2250 587 SUPERFAMILY Pectin lyase-like 264 560 IPR011050 -
Lja6g2250 587 CDD PMEI-like_3 64 214 - -
Lja6g2250 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 212 IPR035513 -
Lja6g2250 587 SMART PMEI_2 56 208 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2250 Lja-Chr6 51435160 51437636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2250 11 584 Carbohydrate Esterase AT3G05610 44.444 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2250 K01051 - gmx:100784682 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2250 6 51435160 51437636 Lja6g2250 6 51435160 51437636 ECH
Lja4g1306 4 11695507 11697600 Lja6g2250 6 51435160 51437636 PCT