Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja6g2248 | ATGGAAAACCATGAAGCCAAACACGAGTTCAAGGAGGTGGACCCCATGCCAAACGTCTTCGACGCCAAAGGCTACAGCCTCAGCGGCAAGATCATGCTCTCTTGCATCATCCTTCTCTTCTTCATCGTCGTCTTAATGGTCTGCCTCCACATTTACGCCCGCTGGTACCTCCTCCGCGCTCGCCGCCGCCACCACCACAACCTCCGCCGCCGTCAAGCCCAGCTCGTGTTCTACCCTGACCCCACCAACCCCACCACTCTTCAACAAGACATCTACCCCGGCATCTACGCCGCCGCCGTATCCTTCATCGCCGCCGCCCCACGTGGCCTGGAAGCTTCCGTCATCACCTTGCTCCCTGTCTTCTCCTACGACCCCAAGGCCCACCCGGAAGGACCTCCGGAATGTGCCGTTTGCTTGTCGGAGTTTGAATCGGGTGAAACGGGTCGGGTTTTGCCCAAATGCAAGCACGCTTTCCACACCGATTGTATTGACATGTGGTTCCACTCTCACTCCACCTGCCCCCTCTGCCGCACCCTGGTGGAGCCTGAACCCGAAAACCAGACCCAGACCCGGCCTGAATTGGTTCTGGTGGACGTACCGGAACACGGGTCGAGTTCCGGGTCGGGTTTGGAGACTGAGAATCGGACCGGCCCAGAAGTTTCTTCGTCGTCGGTTGGGTCGAGGAGGAAGCCGCCGTTAATCGGCGTGACAGTTGAGGTGCCGCCGAGGAGCGAGAGTTTCAACGTTGACGGCGACTCGCCGTCGTCTCAGTCGTCGTTCCGGTCGCCGATGAGTCGGATGCTTTCGTTGAAGAGAATTCTCAGCAGGGAGTGGAAGGGGAGCGTGTCCCCGTCGTCTAGTGGTGGTGGTGGTTGCAGCTCTGTCTCTGCGGTGGAGTGCATCGACGTGGAGCGAGGTGAACGGGAGGAGACTCAGTGA | 939 | 0.5953 | MENHEAKHEFKEVDPMPNVFDAKGYSLSGKIMLSCIILLFFIVVLMVCLHIYARWYLLRARRRHHHNLRRRQAQLVFYPDPTNPTTLQQDIYPGIYAAAVSFIAAAPRGLEASVITLLPVFSYDPKAHPEGPPECAVCLSEFESGETGRVLPKCKHAFHTDCIDMWFHSHSTCPLCRTLVEPEPENQTQTRPELVLVDVPEHGSSSGSGLETENRTGPEVSSSSVGSRRKPPLIGVTVEVPPRSESFNVDGDSPSSQSSFRSPMSRMLSLKRILSREWKGSVSPSSSGGGGCSSVSAVECIDVERGEREETQ* | 313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja6g2248 | 312 | PANTHER | RING-H2 FINGER PROTEIN ATL64 | 22 | 229 | - | - | |
| Lja6g2248 | 312 | SUPERFAMILY | RING/U-box | 134 | 187 | - | - | |
| Lja6g2248 | 312 | MobiDBLite | consensus disorder prediction | 277 | 312 | - | - | |
| Lja6g2248 | 312 | MobiDBLite | consensus disorder prediction | 279 | 293 | - | - | |
| Lja6g2248 | 312 | MobiDBLite | consensus disorder prediction | 205 | 228 | - | - | |
| Lja6g2248 | 312 | CDD | RING-H2_EL5_like | 134 | 177 | - | - | |
| Lja6g2248 | 312 | ProSiteProfiles | Zinc finger RING-type profile. | 135 | 177 | IPR001841 | - | |
| Lja6g2248 | 312 | Pfam | Ring finger domain | 134 | 177 | IPR001841 | - | |
| Lja6g2248 | 312 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 185 | IPR013083 | - | |
| Lja6g2248 | 312 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE | 22 | 229 | - | - | |
| Lja6g2248 | 312 | SMART | ring_2 | 135 | 176 | IPR001841 | - | |
| Lja6g2248 | 312 | MobiDBLite | consensus disorder prediction | 248 | 264 | - | - | |
| Lja6g2248 | 312 | MobiDBLite | consensus disorder prediction | 184 | 264 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja6g2248 | Lja-Chr6 | 51422862 | 51424454 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja6g2248 | 11 | 284 | Rapid Response to Elicitors | AT3G16720 | 48.630 | 5.94e-64 | 202 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja6g2248 | - | - | lja:Lj6g3v1468220.1 | 573.163 |