Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2243 ATGAATGATTCTTCAGGAGATAACTGGCTTAATCCGTTTGATGACGAGCTTTATATCATCGATGAGGATGATAGTCTGAATTCTAGCCCTGCCAACGGTTTGAAGCAGGGTGTGAATGAAGGGGATAATGATGGGGAAAATTTTGTGGATGTCGATGAGATGTTTGAAACTGGAAATGACAGTCAAAAAAACTCTGATGTAGAAGTTAAAGTCATGAAAAGGATTACTGAATTGTCTGCAGACGACATTAGAGGGATGGATTTCTCTTATGAGGAGGAAGCATGTGAATTCTATTCTAAATATGCTCGTATCCGTGGATTCTCTCCAAGAAAAGATGATGTATACAAGGATGATGATGGCAAGATTATCTCACGACAGGTGGTGTGCAATAGGGCTGGACAAAGGCATCAGAAGCATATGCATAATAGTGGCAGAAGAAAACAACCTAAGCCTATTACTAGAGTGGGTTGCCTTGCTAGAATTCGATTTCGTTGTTTTTCTAGCAGTAAAAGGTGGAAAGTGGTTTTTGTTTGCGATGAACACAATCACCCATTAACACCATATAAGCATGTTCATTTGATTCCAAAATTCCGGCAATTGAGTGAAGGGGACAAAGCTCAAGCAGAAGAGCCTAGTATTCATTCACAGAATATGAAATTGTTGCGAAAAGGAGCTATGTCTGCCGCATGCAACTATCTCGCAGAAATAGCATGCGAAAAGGATGATGATTTTTCAAGTGTAATGGAAGACATTTATAAGCTGTTGAGGGATGTTCAGAAGAGTCGCAAACCGGGTTGTACAACAAAGAGTGCAGCCTTTAATGTGGGTGATCCAACTGTTGTACAGGGTAGAGGAGCCCCCAAGAAGACCAGAACTGTCACCAAGAGAAGGCATTGCTCAAATTGCAGGGGTATTGGACACACGATTCGTACGTGCCCGGTTTTGCTTTATCCTGATCAAGTCAATAACAGTGAAACAGGTGAATCTGCAAGTGAAGGAATTGAGGACAGCACAGACGACGAGACAAACGTTGGCAGCGTAGATCGGCAGAATAAGGGGGCTTCGGTGGCAAGTAAACTTAAATCGCAGCAACGGAAGCAGGGAAATGACTCCTCATCCACCCAAAACAAGCGTTCAAATCAGAACACGGTGTCGACAAAACAAAATAAGCGTAAATCTAAGCAGCGAGAAGTCCCAGTCATGATTCATTCAAGCCAAGTATCTGTGAATGAAGTGACTCAGAGTTCACCGAATAATGCAGGTCGCGGTGATGTGGATAACAACAGAGTTACTTTGTTGCCCCAGCATCCACAGGAAATACCTTTGACCCAAGAATCTGTGAATCAGGTTTATAACATGAAGCCTATTGTACAACAAGTCCACTATCCTGTTGTTCGTGCTTCAGCTGGACTTCCATTTTTGCAACCTACTTATGCCGTGAATATGGCTAATGGAGTTCAGGTGTTTCCACAGTTTATACAGCACCAAAACGTCCAGGTTCCTTACCAAGGAGTTCAGATGCAAACTCTATTTCAAGCTGGACCTTCTGGCTTACTCCCGACATTTTCATCGACGTTGGCGGCAGTCGATAGGAGACACAATAGAAATTCTAGTTTAGGAAATAATTGA 1629 0.426 MNDSSGDNWLNPFDDELYIIDEDDSLNSSPANGLKQGVNEGDNDGENFVDVDEMFETGNDSQKNSDVEVKVMKRITELSADDIRGMDFSYEEEACEFYSKYARIRGFSPRKDDVYKDDDGKIISRQVVCNRAGQRHQKHMHNSGRRKQPKPITRVGCLARIRFRCFSSSKRWKVVFVCDEHNHPLTPYKHVHLIPKFRQLSEGDKAQAEEPSIHSQNMKLLRKGAMSAACNYLAEIACEKDDDFSSVMEDIYKLLRDVQKSRKPGCTTKSAAFNVGDPTVVQGRGAPKKTRTVTKRRHCSNCRGIGHTIRTCPVLLYPDQVNNSETGESASEGIEDSTDDETNVGSVDRQNKGASVASKLKSQQRKQGNDSSSTQNKRSNQNTVSTKQNKRKSKQREVPVMIHSSQVSVNEVTQSSPNNAGRGDVDNNRVTLLPQHPQEIPLTQESVNQVYNMKPIVQQVHYPVVRASAGLPFLQPTYAVNMANGVQVFPQFIQHQNVQVPYQGVQMQTLFQAGPSGLLPTFSSTLAAVDRRHNRNSSLGNN* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2243 542 MobiDBLite consensus disorder prediction 347 388 - -
Lja6g2243 542 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 24 245 - -
Lja6g2243 542 MobiDBLite consensus disorder prediction 24 43 - -
Lja6g2243 542 MobiDBLite consensus disorder prediction 323 427 - -
Lja6g2243 542 MobiDBLite consensus disorder prediction 399 427 - -
Lja6g2243 542 Pfam FAR1 DNA-binding domain 96 186 IPR004330 -
Lja6g2243 542 ProSitePatterns EF-hand calcium-binding domain. 42 54 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2243 Lja-Chr6 51362999 51366430 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g2243 FAR1 5.7e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2243 - - lja:Lj3g3v0948310.1 284.648