Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2233 ATGGAAGGTAACAAGGACGAAGCACTGAGATGCGTTCGCATCGCCGAGGAGGCGATTGCATCAGGGAACAAAGATCGCGCGCTCAAGTTCATCAAAATCGCGCAGCGCCTCAATTCCGACCTGCCGGTGGACGCGTTGCTGAGCGCGTGTAATCGCCTCGATTCACAATCCTCCGGTGGCGCCACCGCCGCCGCGGGCGGCGGCGGCGGCGGCGGCGGGGGTAAGACGCCCAGAGCTCCGGCGAGAACCGAAGAGAGGAGTTACACGGAAGAGAATGTTCAGTTGATTAGGGAGATTAAAGGGAAGAGCGATTACTATGCCATTCTTGGCCTTGAGAGGAGCTGTTCCGGCGATGAGATTCGGAAGGCTTATCGGAAGCTCTCACTGAAGGTTCATCCTGATAAGAACAAAGCGCCGGGTTCAGAGGATGCGTTCAAGAAGGTTTCCAAGGCATTCAAGTGTTTGAGTGATGATGGTTCGCGGAGGCAGTATGATCATACTGGTTTGGTGGATGAATTTGAGGCGAGCCAGCAGAGTAGTTTCAGGCGCCGGAGAAGAAGAACGACGGCGGCGCATGATATTTTCGAAGACGAGTTTGATCCTGATGAGGTATTCAGGGCATTTTTTGGACAGTCCACTGTGTTTGGGAGGAGGACTCACCTGTATAGGACTAATGGGACGGGTGGTAATCATCAGAGGCACGAGTTTCAGGGTGGTGGTGGTGGTGGTGGAGGAGGAGCCGGGCTTAATATCATGCTCCTGGTTCAGCTCTTGCCCTTCTTGATCATTTTCCTGCTTGCCTACTTGCCGTTTTCGGAGCCTGATTTTTCTCTGCATAAGAATTACTCCTACCAGATTCCGAAGACGACAGAGCAGCATGGGGTTCAGTTTTTCGTGAAATCTCAGGCATTCGACGCTAACTACCCGCTCGGAAGTTCGGCTCGTGCAGCCATTGAGGATAATGTCATAAAGGATTATAAGAATATGCTTCGTCGTTATTGTCAGGTGGAGAATCAGAGGCGTATGTGGAATAGGAATCTGCCTGCTCCTCACTGTGATAAGCTAAAAAACTTTGCAGTAGTAGCCTGA 1089 0.5197 MEGNKDEALRCVRIAEEAIASGNKDRALKFIKIAQRLNSDLPVDALLSACNRLDSQSSGGATAAAGGGGGGGGGKTPRAPARTEERSYTEENVQLIREIKGKSDYYAILGLERSCSGDEIRKAYRKLSLKVHPDKNKAPGSEDAFKKVSKAFKCLSDDGSRRQYDHTGLVDEFEASQQSSFRRRRRRTTAAHDIFEDEFDPDEVFRAFFGQSTVFGRRTHLYRTNGTGGNHQRHEFQGGGGGGGGGAGLNIMLLVQLLPFLIIFLLAYLPFSEPDFSLHKNYSYQIPKTTEQHGVQFFVKSQAFDANYPLGSSARAAIEDNVIKDYKNMLRRYCQVENQRRMWNRNLPAPHCDKLKNFAVVA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2233 362 MobiDBLite consensus disorder prediction 58 90 - -
Lja6g2233 362 Gene3D DnaJ domain 101 220 IPR036869 -
Lja6g2233 362 PRINTS DnaJ domain signature 124 139 IPR001623 -
Lja6g2233 362 PRINTS DnaJ domain signature 140 160 IPR001623 -
Lja6g2233 362 PRINTS DnaJ domain signature 106 124 IPR001623 -
Lja6g2233 362 PANTHER AT29763P-RELATED 1 360 - -
Lja6g2233 362 CDD DnaJ 104 157 IPR001623 -
Lja6g2233 362 Pfam Domain of unknown function (DUF1977) 272 342 IPR015399 -
Lja6g2233 362 ProSiteProfiles dnaJ domain profile. 104 168 IPR001623 -
Lja6g2233 362 SMART dnaj_3 103 160 IPR001623 -
Lja6g2233 362 SUPERFAMILY Chaperone J-domain 100 210 IPR036869 -
Lja6g2233 362 Pfam DnaJ domain 104 165 IPR001623 -
Lja6g2233 362 PANTHER CHAPERONE PROTEIN DNAJ 49 1 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2233 Lja-Chr6 51286447 51291088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2233 99 165 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.437 2.05e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2233 K09518 - gmx:100820432 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2233 6 51286447 51291088 Lja6g2233 6 51286447 51291088 ECH