Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2230 ATGCCGCAGGCAAATGCTGCCGCTCTCTACGACCACGCCGCCGCCTCCGATGCTGGCGACGCCGTCATGGCTCGCTGGCTTCAGTCCGCCGGCTTGCAGCATCTTGCCTCCCCCGTCGCTTCCTCCGCCATCGACCATCGCCTCCTCCCCAACCTTCTCATGCAGGGTTATGGAGCACAGTCTGCTGAAGAGAAGCAGAGGCTTTTGAAGTTGATGAGAAATCTCAATTTCAATGGGGAGTCTGGTTCGGAGCCGTATACGCCCACTGCCCAAACTTTAGGTGGAGTGGCTGCATCGGATGGGTTTTATTCTCCGGAGTTCAGGGGGGATTTTGGAGCTGGGCTTTTGGATCTTCATGCTATGGATGATACAGAGCTTTTGTCTGAGCATGTTATTTCAGATACTTTTGAACCATCACCCTTCATGCCTGGAGATGCTAGAGTATTTGAAGACGATTTCAATCCAATTAACAGCAGGCTGGAAAGAGAAGCAGATATTGATGTATCAAGTTCTTTTCCTATGAATGAAAAAGAGAATAGTACAAGGGAAAATAATGTAGCCAAGATTAAAGTCGTGGTACGCAAAAGACCTTTAAACAAGAAGGAGCTTGCTAAAAAGGAGGATGATATTGTGACTGTATCTGACAGTGCATATTTGACAGTCCATGAGACCAAGCTAAAGGTTGATTTGACGGCTTATTTGGAGAAGCATGAGTTTTGCTTTGATGCTGTTCTTGATGAGAATGTTACCAATGATGAAGTATATCGAGCTACAGTTGAACCAATTATTCCTACAATTTTTGAGCGAACCAAAGCTACCTGTTTTGCTTATGGTCAGACAGGAAGTGGCAAAACATACACAATGCAACCTTTACCACTCAGAGCTGCAGAAGATCTTGTCCGACAGTTGCGTCAACCAGTTTACCGGAATCAGCGATTTAAACTGTGGCTTAGCTACTTTGAGATATACGGTGGAAAACTATTTGATCTTCTTAGTGACAGAAAGAAACTTTGCATGAGGGAAGATGGCCGGCAGCAAGTTTGCATAGTAGGACTGCAAGAATTTGAAGTTTCTGACGTACAAGTTGTTAAAGAATTCATTGAAAAGGGAAATTCTACAAGAAGTACAGGATCTACTGGAGCTAATGAGGAGTCCTCCAGGTCACATGCTATCTTACAATTGGCTGTAAAGAAGCATGGTGAGGTGAAAGAGAAAAAGCGGAACAATGATGCAAATGAGGCAAGAAGTGGCAGGGTTGTGGGAAAGATTTCATTTATCGATCTTGCTGGAAGTGAAAGAGGTGCTGACACTACTGATAATGATCGTCAGACACGGATTGAAGGAGCTGAAATCAACAAGAGCCTTTTGGCTTTGAAGGAATGCATTCGTGCTTTAGACAATGACCAGACCCATATTCCATTTCGTGGAAGCAAACTAACAGAAGTACTTCGCGACTCCTTTGTAGGCAATTCAAAGACTGTTATGATCTCTTGTATATCTCCAGGTGAAGGGTCTTGTGAACACACGCTAAACACCTTGAGATATGCTGATAGGGTTAAAAGTCTATCCAAAAGTGGTAATCCAAGAAAAGACCAGGTTCCAAATTCTGTGCCACAAGCTAATGTTTCTTCCTCGTCAACTCTTCCATCTAGTGCTGGCGCAGAGGATTTTAACGATCAGCATCAAGAGAAAACAATGGATATGGGCAGGAAACTTGTTGAAAAGGAACGTTCTCTGTACAGTTCTGTGACTGATGTTGACAAACAGCCATCAAGTGCTTCTTCAAGTTACCCATTAAACAGGCGAGAAGAAAAAGGTCTGTCTTCTGCTTCAATGGACAGGGAGAGGTTTGAAGTGAAGAACTCCTACAGCGATTCTACAAGTCAAAAGATTAACTCTTATTCACAAAATGATACGGTTGAGAGAGTGCAAAAGGTGTCTCCTCCACGCAGAAAAGGTACTAAGGAGGAAAAGTCTGAAAGGCCTGCAAACTTGATGAAAAGGGATGTCAATGGTTTTGATCTCTTCACCACAAGCTCGAAGCAGGAGACCGCCGGGAATTATAGCACTGTTACAGCTGCTGGATCCAGGCTTTATGAAGCAGAATCCTCTCCTGACGGGAATATCAGCGCAGTACTGGAGGAGGAAGAAGCACTAATAACTGCTCATAGAAAAGAAATAGAGGACACAATGGAGATTGTTCGTGAAGAAATGAAACTCTTGGCTGAAGTGGACCAACCGGGAAGCCGGATTGACAACTATGTAACCCAATTGAGCTTTGTGCTTTCGCGCAAAGCAGCTAGTCTCATGGGACTCCAAGCTCGCCTCGCAAGATTCCAACATCGACTGAAAGAACAGGAGATTCTAAGCAGGAAACGAGTTCCCCGTTCATAA 2394 0.4436 MPQANAAALYDHAAASDAGDAVMARWLQSAGLQHLASPVASSAIDHRLLPNLLMQGYGAQSAEEKQRLLKLMRNLNFNGESGSEPYTPTAQTLGGVAASDGFYSPEFRGDFGAGLLDLHAMDDTELLSEHVISDTFEPSPFMPGDARVFEDDFNPINSRLEREADIDVSSSFPMNEKENSTRENNVAKIKVVVRKRPLNKKELAKKEDDIVTVSDSAYLTVHETKLKVDLTAYLEKHEFCFDAVLDENVTNDEVYRATVEPIIPTIFERTKATCFAYGQTGSGKTYTMQPLPLRAAEDLVRQLRQPVYRNQRFKLWLSYFEIYGGKLFDLLSDRKKLCMREDGRQQVCIVGLQEFEVSDVQVVKEFIEKGNSTRSTGSTGANEESSRSHAILQLAVKKHGEVKEKKRNNDANEARSGRVVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQTHIPFRGSKLTEVLRDSFVGNSKTVMISCISPGEGSCEHTLNTLRYADRVKSLSKSGNPRKDQVPNSVPQANVSSSSTLPSSAGAEDFNDQHQEKTMDMGRKLVEKERSLYSSVTDVDKQPSSASSSYPLNRREEKGLSSASMDRERFEVKNSYSDSTSQKINSYSQNDTVERVQKVSPPRRKGTKEEKSERPANLMKRDVNGFDLFTTSSKQETAGNYSTVTAAGSRLYEAESSPDGNISAVLEEEEALITAHRKEIEDTMEIVREEMKLLAEVDQPGSRIDNYVTQLSFVLSRKAASLMGLQARLARFQHRLKEQEILSRKRVPRS* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2230 797 PANTHER KINESIN-RELATED PROTEIN 6 655 796 - -
Lja6g2230 797 Coils Coil 769 789 - -
Lja6g2230 797 MobiDBLite consensus disorder prediction 579 664 - -
Lja6g2230 797 ProSitePatterns Kinesin motor domain signature. 421 432 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lja6g2230 797 PANTHER KINESIN-LIKE PROTEIN 4 658 - -
Lja6g2230 797 MobiDBLite consensus disorder prediction 606 621 - -
Lja6g2230 797 SMART kinesin_4 186 528 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g2230 797 PRINTS Kinesin heavy chain signature 269 290 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g2230 797 PRINTS Kinesin heavy chain signature 379 396 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g2230 797 PRINTS Kinesin heavy chain signature 422 440 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g2230 797 PRINTS Kinesin heavy chain signature 472 493 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g2230 797 MobiDBLite consensus disorder prediction 644 664 - -
Lja6g2230 797 CDD KISc_KIF2_like 188 520 - -
Lja6g2230 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 522 IPR027417 -
Lja6g2230 797 Coils Coil 713 744 - -
Lja6g2230 797 MobiDBLite consensus disorder prediction 622 643 - -
Lja6g2230 797 MobiDBLite consensus disorder prediction 522 557 - -
Lja6g2230 797 MobiDBLite consensus disorder prediction 526 556 - -
Lja6g2230 797 ProSiteProfiles Kinesin motor domain profile. 188 522 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g2230 797 Pfam Kinesin motor domain 194 521 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g2230 797 Gene3D Kinesin motor domain 164 525 IPR036961 -
Lja6g2230 797 PANTHER KINESIN-LIKE PROTEIN 655 796 - -
Lja6g2230 797 MobiDBLite consensus disorder prediction 583 602 - -
Lja6g2230 797 PANTHER KINESIN-RELATED PROTEIN 6 4 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2230 Lja-Chr6 51237180 51244525 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2230 180 522 Calmodulin-binding Proteins AT5G65930 34.085 8.40e-43 166