Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2228 ATGTCTTCTCCTTCCTGGCTAACCTCCCCTTCATGTTCTTCCTCTCTAGCCATAGATTCATTTTCCCCTCCAGCACAGCTCACAATTCAATGGCTGAGATTCATCTTCCTATCTCCATGTCCTCAGAGAATCCTTCTTTCTTCTCTTGACCTCTTGTTCTTGCTCTCCCTCCTAGCCTTTGCAGCTTGCAAGCTCTATTGTCGGTTCACTTCCAATACCAACAACTCCACCTCCTCCATCACCAAACCCCTTCTGCAGGAACAGGACTCTGACTACAGAATAACCTTGTGGTTCAAACTTCCCTTGTTGGTAACCGCACTTTTGGCTATAGCTTACACTGCTCTTGGTGTTTTAGCTTTCACTCTAAGCAACTTTGCTTCATGGAAGCAGATAGAGGCACTGTTTCGGTTATCTCAAGCAGTAGCCAACATAGTGATAGTGATTCTGTTAGTACATGAAAAGAAGTTCAAAGCTCTCAAACACCCTTTATCACTAAGAATCTATTGGATTGCAAACTTGGTGGTTGCTTGCTTGTTTGCTGCTTCAGCCATTTTTCGATTGGTAACGGTGGATGAAGCGTGGTTGGAGGGGACTAATTTGAGAATTGATGACATATTCTCTTTGGTTAATCTTCCAATTTCTGTGTTCTTTTTTGTAATAGCTATTAAAGGTTCATCAGGGATTCATGTAGTTAGAATATCTGATGTAGTAGGAACATTAACATCTCAGAGGCTTCCCACAGACAGGAATTTGAGTCCTTATGCTAATTCTTCCCTTTTGTCCAAAACATTTTGGCTTTGGATGAATCCTTTGATCAATAAAGGGTATAAAACACCTCTTAAGCTTGAAGATGTTCCTTCTCTTCCTACTGATTTCAGAGCAGAAAGAATGTCAGAACTTTTCCAAAGCAATTGGCCAAAGCCAGAGGAAAACAGCAAGCACCCTGTTGGATTCACCTTATTAAGGTGCTTCTGGAAACATATAGCTTTCACTGGCTTCCTTGCTGTCATAAGACTTTCTGTCATGTACATTGGTCCAATGCTTATCCAAAGTTTTGTTGACTACACCTCAAGAAAAAACAGCACTCCCAATGAAGGTCTTGTTCTGATATTGATCCTGTTTCTAGCAAAATCAGTTGAAGTCCTCAGTGTCCACCAATTCAACTTCCATTCTCAGAAACTCGGCATGTTGATTCGTTCCAGCATCATCACCTCTGTGTACAAGAAGGGTTTGAGGCTGTCAAGTTCTTCGAGGCAAGCGCATGGGACCGGCCAGATTGTGAACCACATGGCTGTTGATGCTCAGCAGCTATCAGACTTGATGTTGCAGTTTCATCCTATATGGTTGATGCCACTGCAAGTTGCTGCAGCATTGGCACTAATTTATAACTATGTTGGCTTGTCTGCACTTGCAGCATTGTTTGGAACTTGCATAGTGTTCTGCTTCACACTCCTCCGCACCAAGAGGAGCAACAGCTTCCAGTTCCGAATCATGACGAGTCGTGACTCGAGGATGAAAGCAACTAATGAATTGCTTAACAACATGAGAGTCATTAAGTTTCAAGCGTGGGAGGAGTATTTCGGTAACAAGATTCGAGAGTTTCGCGAAGCTGAGCATAGTTGGATTGGCAAGTTCTTGTACTATTTCGCTGTGAACATGGGGGTTCTGTCCACTGCTCCTCTCATGGTGACTGTTCTCACCTTTGGAACAGCAACTTTAATTGGTATTCCTCTTGATGCTTCCACTGTGTTTACTATAACTTCAGTAATCAAGATTTTGCAAGAGCCGGTGAGGACATTCCCCCAGGCTCTTATATTGATTTCTCAAGCACTAATCTCTCTGGGGAGGTTGGATGAGTACATGATGAGTAAGGAAACGGATGAGAGTTCAGTGCAGAGAGAGGATAACCGTGATGGTGACGTAGCTGTGGAGATAAAAGATGGGAAATTCTCATGGGATGATGGGGATGGGAATGAGGCTTTGAAAGTTGAAGAGCTGGAAATTAAGAAAGGGGACCATGCTGCAATTGTAGGAACTGTTGGGGCAGGCAAGTCTTCATTGTTAGCTTCTGTGTTGGGCGAAATGTTCAAGATCTCAGGAAAGGTCAGAGTAAGCGGGACAATAGCCTATGTAGCACAGACATCATGGATTCAGAATGCAACCATCCAAGAAAACATATTGTTTGGTTTACCAATGAACAGGGATAAGTACCAGGAAGTTATAAGAGTGTGCTGCCTGGAAAAGGATCTGGAGATGATGGAATATGGAGACGAGACTGAGATCGGAGAACGCGGTATTAACCTCAGTGGTGGACAGAAACAACGCGTCCAACTTGCTAGAGCTGTATATCAGGACTGTGAAATCTATCTCCTTGATGATGTATTCAGTGCTGTTGACGCCGAAACAGGTTCATTTATTTTTAAGGAATGTATCATGGGAGCTCTCAAAGATAAGACCATTTTACTTGTAACCCACCAAGTTGACTTCTTGCATAATGTTGACTCTATACTTGTGATGCGAGATGGGAGAGTTGTGCAAAGTGGAAAGTATGAAGAACTTCTCAAAGCTGGCCTGGATTTTGGTGCACTTGTAGCTGCTCATGAATCCTCTATGGAGATTGCAGAAACGAGTGAAAAAGCCGGTGATGATTCTGGCCAGTCTCCGAAATTGGCTCGTGTCGCTTCAAAAGAAAAGGAAAGCACAGCTGAAAAGCAGCCTCAAGAACAATCAAAATCTGAGAAGACCAAAGCAAAGCTCATTGAAGGTGAGGAGAAAGAAACCGGCCACGTGGACCTTAAAGTATACAAGCACTATTTCACTGAAGCATTTGGATGGTGGGGAATAGTACTCATGCTTGGAATGTCTCTAGCATGGATTTTATCATTTTTGGCTGGTGACTACTGGCTAGCCGTTGCAACTTCAGAAGATTCTCGAATTCCTTCTTTTACCTTCATCATTGTTTATGCTATCATAGCAGCTCTTTCATGTGGGGTGGTGATGGTTAGGTCAATCTTATTCACATATTGGGGTCTAAAGACATCTCAAAGCTTCTTCAGTGGAATGCTTCGGAGCATTCTACATGCACCAATGTCATTCTTTGACACTACTCCTTCTGGCAGAATCTTGAGTCGTGTATCTACTGATCTACTTTGGGTTGATATATCAATTCCAATGTTAATAAGCTTCGTGATGGTTGCATACTTCTCATTAATCAGCATCCTCATTGTCACATGCCAAAATGCTTGGGAGACTGTCTTCCTTTTAATTCCACTGTTTTGGCTGAATAACTGGTACCGGAAATATTACCTTGCATCTTCTCGGGAGTTGACTCGCCTCGATTCTATCACGAAAGCTCCTGTGATTCATCACTTTTCAGAGACCATTTCTGGTGTTATGACAATCCGTGGCTTCAGAAAGCAAGGTGAATTTTGCCAGGAAAACATTGACAGGGTCAATGCAAGTCTGAGGATGGATTTCCACAACAATGGAGCGAACGAATGGCTTGGTTATCGCCTGGACTTTACTGGAGTGGTTTTCCTTTGCATTTCCACCATGTTTATGATCTTCTTGCCAAGTTCTATTGTTAGGCCAGAATATGTTGGTTTGTCTCTATCCTATGGCCTAGCTCTCAGTAGTGTCTTGTCATTTACCATTAGCATGACTTGCAATGTTGAGAACAAAATGGTTTCAGTTGAGAGAATAAAGCAGTTTACCAACCTTCCATCAGAAGCTCCATGGAAAATCCCTGATTTGTCTCCTCCTCAGAATTGGCCCAATCATGGCAGCATAGAGTTAAACAGTTTGCAGGTTCGGTATCGTCCGAATACTCCTCTGGTTCTGAAAGGAATCTCTCTCACCGTTCAAGGAGGGGAAAAGATTGGTGTTGTTGGGCGCACAGGGAGTGGGAAATCAACCCTCATCCAAGTGTTATTTAGGTTGATTGAGCCTTCAGCTGGGAAAATAATTATTGATGGGATCAACATTTGCACTTTGGGCCTTCATGATGTGAGGTCTCGTCTTGGAATTATTCCACAAGACCCTGTCCTCTTTCGAGGAACGGTGAGAAGTAACATTGACCCACTTGGATTGTATACAGAAGAAGAAATTTGGAAGAGCCTTGAGCGTTGCCAACTGAAAGATGTGGTGGCTGCAAAGCCTGAGAAACTTGAAGCTTCAGTGGTTGATGGGGGGGACAATTGGAGTGTGGGGCAAAGGCAGCTTCTGTGCTTGGGAAGGATCATGCTAAAACGCAGCAAAATACTATTCATGGATGAGGCAACAGCATCCGTTGATTCACAAACTGATGCTGTAGTACAGAAGATTATCAGGGAGGACTTTGCAGACCGCACAATTGTTAGTATTGCTCACAGAATACCAACAGTCATGGACTGTGACAGGGTTTTGGTCATAGATGCAGGATTTGCAAAGGAATTTGACAAGCCATCACGTTTGCTGGAAAGGCCTGCACTTTTTGGGGCATTGGTTAAGGAGTACTCTAATAGATCAGCTTAA 4512 0.432 MSSPSWLTSPSCSSSLAIDSFSPPAQLTIQWLRFIFLSPCPQRILLSSLDLLFLLSLLAFAACKLYCRFTSNTNNSTSSITKPLLQEQDSDYRITLWFKLPLLVTALLAIAYTALGVLAFTLSNFASWKQIEALFRLSQAVANIVIVILLVHEKKFKALKHPLSLRIYWIANLVVACLFAASAIFRLVTVDEAWLEGTNLRIDDIFSLVNLPISVFFFVIAIKGSSGIHVVRISDVVGTLTSQRLPTDRNLSPYANSSLLSKTFWLWMNPLINKGYKTPLKLEDVPSLPTDFRAERMSELFQSNWPKPEENSKHPVGFTLLRCFWKHIAFTGFLAVIRLSVMYIGPMLIQSFVDYTSRKNSTPNEGLVLILILFLAKSVEVLSVHQFNFHSQKLGMLIRSSIITSVYKKGLRLSSSSRQAHGTGQIVNHMAVDAQQLSDLMLQFHPIWLMPLQVAAALALIYNYVGLSALAALFGTCIVFCFTLLRTKRSNSFQFRIMTSRDSRMKATNELLNNMRVIKFQAWEEYFGNKIREFREAEHSWIGKFLYYFAVNMGVLSTAPLMVTVLTFGTATLIGIPLDASTVFTITSVIKILQEPVRTFPQALILISQALISLGRLDEYMMSKETDESSVQREDNRDGDVAVEIKDGKFSWDDGDGNEALKVEELEIKKGDHAAIVGTVGAGKSSLLASVLGEMFKISGKVRVSGTIAYVAQTSWIQNATIQENILFGLPMNRDKYQEVIRVCCLEKDLEMMEYGDETEIGERGINLSGGQKQRVQLARAVYQDCEIYLLDDVFSAVDAETGSFIFKECIMGALKDKTILLVTHQVDFLHNVDSILVMRDGRVVQSGKYEELLKAGLDFGALVAAHESSMEIAETSEKAGDDSGQSPKLARVASKEKESTAEKQPQEQSKSEKTKAKLIEGEEKETGHVDLKVYKHYFTEAFGWWGIVLMLGMSLAWILSFLAGDYWLAVATSEDSRIPSFTFIIVYAIIAALSCGVVMVRSILFTYWGLKTSQSFFSGMLRSILHAPMSFFDTTPSGRILSRVSTDLLWVDISIPMLISFVMVAYFSLISILIVTCQNAWETVFLLIPLFWLNNWYRKYYLASSRELTRLDSITKAPVIHHFSETISGVMTIRGFRKQGEFCQENIDRVNASLRMDFHNNGANEWLGYRLDFTGVVFLCISTMFMIFLPSSIVRPEYVGLSLSYGLALSSVLSFTISMTCNVENKMVSVERIKQFTNLPSEAPWKIPDLSPPQNWPNHGSIELNSLQVRYRPNTPLVLKGISLTVQGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKIIIDGINICTLGLHDVRSRLGIIPQDPVLFRGTVRSNIDPLGLYTEEEIWKSLERCQLKDVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDAVVQKIIREDFADRTIVSIAHRIPTVMDCDRVLVIDAGFAKEFDKPSRLLERPALFGALVKEYSNRSA* 1504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2228 1503 MobiDBLite consensus disorder prediction 892 920 - -
Lja6g2228 1503 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 945 1226 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2228 1503 Pfam ABC transporter 1280 1428 IPR003439 GO:0005524
Lja6g2228 1503 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 61 1503 - -
Lja6g2228 1503 SMART AAA_5 1289 1473 IPR003593 -
Lja6g2228 1503 SMART AAA_5 670 843 IPR003593 -
Lja6g2228 1503 Pfam ABC transporter transmembrane region 969 1190 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2228 1503 Pfam ABC transporter transmembrane region 330 597 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2228 1503 Gene3D - 1247 1495 IPR027417 -
Lja6g2228 1503 Gene3D - 638 869 IPR027417 -
Lja6g2228 1503 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 61 1503 - -
Lja6g2228 1503 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 329 609 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g2228 1503 SUPERFAMILY ABC transporter transmembrane region 318 621 IPR036640 GO:0005524|GO:0016021
Lja6g2228 1503 CDD ABC_6TM_ABCC_D1 330 617 IPR044746 GO:0140359
Lja6g2228 1503 MobiDBLite consensus disorder prediction 874 920 - -
Lja6g2228 1503 Gene3D ABC transporter type 1, transmembrane domain 312 626 IPR036640 GO:0005524|GO:0016021
Lja6g2228 1503 Gene3D ABC transporter type 1, transmembrane domain 909 1244 IPR036640 GO:0005524|GO:0016021
Lja6g2228 1503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1255 1496 IPR027417 -
Lja6g2228 1503 CDD ABCC_MRP_domain2 1261 1481 - -
Lja6g2228 1503 CDD ABCC_MRP_domain1 643 843 - -
Lja6g2228 1503 Pfam ABC transporter 665 794 IPR003439 GO:0005524
Lja6g2228 1503 ProSitePatterns ABC transporters family signature. 768 782 IPR017871 GO:0005524
Lja6g2228 1503 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1263 1497 IPR003439 GO:0005524
Lja6g2228 1503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 862 IPR027417 -
Lja6g2228 1503 CDD ABC_6TM_ABCC_D2 944 1238 IPR044726 GO:0140359
Lja6g2228 1503 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 643 866 IPR003439 GO:0005524
Lja6g2228 1503 SUPERFAMILY ABC transporter transmembrane region 945 1249 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2228 Lja-Chr6 51201765 51211164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2228 643 855 Calmodulin-binding Proteins AT2G36910 32.751 1.19e-23 107