Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2222 ATGCAGAACGAAGAGGGTCAGATCACCGAGCTTTACATTCCCAGGAAATGCTCTGCCACAAACAGATTGATAACTGCAAAGGACCATGCTTCGGTTCAGATCAACATTGGTCATTTGGATGAGAGCGGCGTCTACAATGGCCAGTTCTCCACCTACGCCCTTTGCGGTTACATCCGTGCACAGGGGGATGCTGACAGTGCAATAGATCGCCTGTGGCAGAAAAAGAAGGCTGAGATTAAGCAACACTAG 249 0.494 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAIDRLWQKKKAEIKQH* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2222 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Lja6g2222 82 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Lja6g2222 82 Gene3D - 1 81 IPR038579 -
Lja6g2222 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 - -
Lja6g2222 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Lja6g2222 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2222 Lja-Chr6 51162244 51163954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2222 1 82 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 80.488 6.79e-51 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2222 K02971 - gmx:100817753 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2222 6 51162244 51163954 Lja6g2222 6 51162244 51163954 ECH