Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2221 ATGATGAGTCCGGAAGGAGAACTTAAAGTAAGTTTTGGCTATCAATGCAATAGCGATAGAGGTATCCCTTGCAAGGTTGCTACTGGCTATGAAATCCTTCCGGAAATCCAGAGAACAAGCAGTTTCTCTTGCTTGTCTGGTGCTGCCTTAAGTGCAAATTGTACACTAGCCAACACAAACATCTGCAATGGTGTGATAGGAGAAGAAATCCTTCCAAGTTTGGACTCTCCAAAATCCTTTCGCCGGGTACCCTCTTCCCCGAGTCTTGCAAAGTTGGACATACTATCATCTTCTCTCCACAGTAGTTTTTCAAACCTGAGTTGCAGCCCCTCTACTCCAAGTGAAATGCTTGAATGTGACCCTTGCACATTAAAATCCATGAGTTCTCCTTCCAGAAGTGAAGGTTTTCTTAATGGTACTGAAGTACAAGTAGCGGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGATGGCTCTTCTGTGCAATTTATGATGGCTTTAATGGGAGAGATGCAGCAGACTTTCTGGCTTGTACCCTTTATGACACTATCATATCTTATTTTAACATGTTATGTTGGGATCTTGAACCAGATTCCATCAAAGCTACTGATAATATGGGTTTGGCTGGATCCTTTCATTGTAATCTGGATAATAGTCACACTCTTCATGAGCACCAATCTCTATCAAGATTTAAGGGAAGCACCAATTCTAGTCCACCTGCCAAATCAGAAGCACCATTTTCAAATGCAGTTCTTAAAAGCCTGCAACATGCTCTTGCTCAGGTTGAGAATGATTTCTTGTGCATGGTTGAGCAGGAAATGGAGGAGCGTCCAGATTTAGTTTGTGTTGGATCTTGTGTTCTACTTGTTCTTCTTCATCGGAATTATTTGTATACACTTAATCTTGGCGACAGCAGAGCAGTGTTGGCTACGCGCGGTACAGATGGAAGAATGAATGGGAATGAGAGATTGAAAGCTATCCAGCTTACGAATAGTCATACAGTTGACGATGAAGCTGAGAGAGCTCAACTTCTTGCCAATCATCCTGATGATCCAAAGACTATTGTAGCGGGGAAAGTAAAAGGAAAACTAAAGGTCACTCGCGCTTTCGGGGTTGGCTACTTGAAAAAGAAAAATCTGAATGATGCATTGATGGGAATCCTTCGAGTTAGTAATCTTAAAAGCCCGCCATATGTTTCAACCGATCCATCAGTGAATGTGCACAAAATCTCAAATTCTGATCAGTTTGTTATAGTTGGGAGTGATGGTTTATTCGACTTCTTCAGCAATGATGAAGCAGTTAAGCTTGTAGAGTCTTATATCTTAAGCAATCCTTACGGTGATCCAGCAAAATTTCTTATTGAGCAGCTAGTAGTGAGAGCAGCTGATTCTGCAGGTTTCAGCATGGAAGAGTTGATGAATATTCCAGCTGGGAGGAGGAGGAAGTATCATGATGATGTGACCGTAATGGTAGTCATGCTTGGGATGAATCAACGGACTTCAAAGGCATCAATTTGCATCTAA 1542 0.4183 MMSPEGELKVSFGYQCNSDRGIPCKVATGYEILPEIQRTSSFSCLSGAALSANCTLANTNICNGVIGEEILPSLDSPKSFRRVPSSPSLAKLDILSSSLHSSFSNLSCSPSTPSEMLECDPCTLKSMSSPSRSEGFLNGTEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLACTLYDTIISYFNMLCWDLEPDSIKATDNMGLAGSFHCNLDNSHTLHEHQSLSRFKGSTNSSPPAKSEAPFSNAVLKSLQHALAQVENDFLCMVEQEMEERPDLVCVGSCVLLVLLHRNYLYTLNLGDSRAVLATRGTDGRMNGNERLKAIQLTNSHTVDDEAERAQLLANHPDDPKTIVAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVSNLKSPPYVSTDPSVNVHKISNSDQFVIVGSDGLFDFFSNDEAVKLVESYILSNPYGDPAKFLIEQLVVRAADSAGFSMEELMNIPAGRRRKYHDDVTVMVVMLGMNQRTSKASICI* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2221 513 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 2 512 - -
Lja6g2221 513 ProSiteProfiles PPM-type phosphatase domain profile. 136 500 IPR001932 -
Lja6g2221 513 Gene3D - 115 509 IPR036457 -
Lja6g2221 513 Pfam Protein phosphatase 2C 225 454 IPR001932 -
Lja6g2221 513 SMART PP2C_4 127 498 IPR001932 -
Lja6g2221 513 CDD PP2Cc 149 498 IPR001932 -
Lja6g2221 513 PANTHER PROTEIN PHOSPHATASE 2C 2 512 IPR015655 GO:0004722|GO:0006470
Lja6g2221 513 SUPERFAMILY PP2C-like 149 501 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2221 Lja-Chr6 51148927 51152188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2221 4 513 PP2C-type Phosphatase Gene Family AT3G16560 63.372 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2221 - - gmx:100791404 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2221 6 51148927 51152188 Lja6g2221 6 51148927 51152188 ECH
Lja4g1278 4 11398007 11402729 Lja6g2221 6 51148927 51152188 PCT