Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2212 ATGTTCAATTTCCATCGCTACAGAGCCCTTCTTCTCCATTTCAACCCCCCAAAACCATGCCCCCTTTTGCCATTTCCATTCCCATCTTCTCTGAACTTGAATCTCTGCACAAGTACAACCACTTCACAATCAGAATCAGAGTCATTCAGAGTGTCCTACTTGATCAACAATCTAGGCTTCACCCCTGAAGCTGCTCACAAAGCTTCCAAAAAACTTCATTTCAACACCCCAGAGAGGCCTGAATCGTTCTTCAACCTCTTCAGAAGCCATGGATTCTCAGACTCCAACATACGCCACATCCTCAGAAAGGAACCATGGCTGCTCTCGTCACGCCCCCACATTTCCATTTTGCCTAAGTTTGAATTCTTCCTCTCTAAAGGCGCTTCAGCCTCTGACATTGTTCGCTTGTTGACGGCGAACCCAAATACCCTACGTAGAAACTTGGAGAACTGTATAATCCCTCAGCATGAGTTGTTTAAGAGGTTTCTGAAATCTGATAAGCAAACCACTGCTTTCATAATTCGCTTCTCGATTTCCCTGCATTATAAGGCGTTCATGGCTAATCTCAATTTGATGATTGATTATGGTGTGTGTGATTCCAGCATTGCCGGATTGCTTCTCACGCGGCCGCGTGTATTGAGCTCAGATAACTTGCTTGAGTCATTGGAGGAAGTGAAGGGTTTGGGGTTTGATCCTTCAAAAACCACTTTTGGTGTGGCATTGAGGGCTTTGAAAGTTGTCACAAAAAACAAATGGGATGAGAAAGTTGATACCTTTAAGAAATGGGGCTGGTCTCATGAGTCTGTTCTTCGAGCATTTAGGAAGCAGCCTCATATGATGCTGCAATCTAGTGATAAGATTAATTTGGTTTTGAGTTTTTGGGTTAATCAGATGGGTTGGGATTCCTTAGCTCTTGTCAAAGGGCCAGGAATTTTTGCTTATAATCTACAGAAAAGGATCATTCCAAGGGCTGCAGTTCTGCAATTTCTTCTTAAGAAAGGTTTGCGAAAAAAGAATTCAAGCTTAATTAAGCCATTTAGCATGCCAGAGGAGGAGTTTCTGAACAAGTTTGTTCTCTGTTTTGTGGAGGAGTCTGCTTGTCTATTGAAGCTGTATAAGGATAAAATGAGTCTTGCATCCACCAAGGAGAGCACTGTTATACCATTGACCAAACATGTACCTCCTTAA 1188 0.4276 MFNFHRYRALLLHFNPPKPCPLLPFPFPSSLNLNLCTSTTTSQSESESFRVSYLINNLGFTPEAAHKASKKLHFNTPERPESFFNLFRSHGFSDSNIRHILRKEPWLLSSRPHISILPKFEFFLSKGASASDIVRLLTANPNTLRRNLENCIIPQHELFKRFLKSDKQTTAFIIRFSISLHYKAFMANLNLMIDYGVCDSSIAGLLLTRPRVLSSDNLLESLEEVKGLGFDPSKTTFGVALRALKVVTKNKWDEKVDTFKKWGWSHESVLRAFRKQPHMMLQSSDKINLVLSFWVNQMGWDSLALVKGPGIFAYNLQKRIIPRAAVLQFLLKKGLRKKNSSLIKPFSMPEEEFLNKFVLCFVEESACLLKLYKDKMSLASTKESTVIPLTKHVPP* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2212 395 PANTHER CGI-12 PROTEIN-RELATED 25 381 IPR003690 GO:0003690|GO:0006355
Lja6g2212 395 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Lja6g2212 395 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Lja6g2212 395 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Lja6g2212 395 SMART mt_12 203 231 IPR003690 GO:0003690|GO:0006355
Lja6g2212 395 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Lja6g2212 395 Pfam mTERF 249 354 IPR003690 GO:0003690|GO:0006355
Lja6g2212 395 Pfam mTERF 85 287 IPR003690 GO:0003690|GO:0006355
Lja6g2212 395 Gene3D Transcription termination factor 3, mitochondrial 165 370 IPR038538 -
Lja6g2212 395 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 25 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2212 Lja-Chr6 51097096 51098283 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja6g2212 mTERF 6.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2212 K15032 - gmx:102666739 341.273