Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2211 ATGTTCAGAGCGTTTCTCTGCCAATCTGGTTTTGATGTCTCAAGAAAATCAACAACCCTAAAGTTGCTTGACCCTGTTTTGCCATTCCCATTGTCTCGCACATTCTGCACTTCGAATCCTAACACATTCGCCGTGTCCTACCTCATCAACAATCTGGGGTTCTCACCGGAATCCGCTCTCAAAGCTTCCAAGCATGCTCGTTTCAAAACCTCGGAAAAGCCTGATTCAGTTGTCACCTTCTTCAGGAACCACGGTTTCACTGTATCAGACACTCGCAGCATCATCACAAGGCAACCCTCGCTCCTTTCTTGCAAAGTTGACAAAAGGGTCCTGCCAAAGTTTCAATTCTTACAATCCATAGGTGCTTCCTCCTCTGACATTGTTCGCATTGTGACAAGTAACCCCAAATTCATGGAGAGTAGCTTGGAGAATAGTGTAATCCCAGCATATAACTTGGTATATAGATTCCACCAATCTGAAAAGAAGACTCTTGCTTCTGTTATTCGGTGTCCATCTTTGCTCTGTAGCCTTTATTTCGAGCTTAATGTCAAGTTGTTGGGGGATAATGGTGTGGCCAGTTCCAGCATTAGCAGAATCCTTAGTCTGAGTCCTCGTGTTTTATGCTCTAGTTACTTGGAAAAAACTGTGCAGGAATTGAAAGACATGGGATTTGACCCTTCCAAAGCATACTTCAGTTTAGCAATGGTTGCCAAAAGAGGTATGAGCAAATCCAAGTGGGATGAGAAAGTTGATACCTTTAAGAAGTGGGGTTGGTCTGAAGAAGCAATTTTGGAGGCATTTAAGAAACAGCCACTTTGTATGGTAGCATCCAATGACAAAATCAATAGGGTGATGTTATTTTGGGTTAATCAGTTAGGTTGGGATTCTTCTTACCTTATGAAGCGACCTTGCATTTTCTCATATAGTTTGGAGAAAAGGGTAATTCCTAGGGCTTCGGCTGTCCACTATCTTCTATCTAAAGGTTTGAGAAGTGAGAGGATCAGCTTGACCTCACCATTTTTTATAACTGAGAAGTTGTTCCTGAAAAGGTACGTGACATGCTTCGAAGAGGAGGAATCTTCTCAGCTGTTGAAGTTATATCTAGGTAAAATGAGAACACAGGGCAACCGTGACGTGTCATGTTCCTAA 1149 0.4256 MFRAFLCQSGFDVSRKSTTLKLLDPVLPFPLSRTFCTSNPNTFAVSYLINNLGFSPESALKASKHARFKTSEKPDSVVTFFRNHGFTVSDTRSIITRQPSLLSCKVDKRVLPKFQFLQSIGASSSDIVRIVTSNPKFMESSLENSVIPAYNLVYRFHQSEKKTLASVIRCPSLLCSLYFELNVKLLGDNGVASSSISRILSLSPRVLCSSYLEKTVQELKDMGFDPSKAYFSLAMVAKRGMSKSKWDEKVDTFKKWGWSEEAILEAFKKQPLCMVASNDKINRVMLFWVNQLGWDSSYLMKRPCIFSYSLEKRVIPRASAVHYLLSKGLRSERISLTSPFFITEKLFLKRYVTCFEEEESSQLLKLYLGKMRTQGNRDVSCS* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2211 382 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 29 375 - -
Lja6g2211 382 Pfam mTERF 79 225 IPR003690 GO:0003690|GO:0006355
Lja6g2211 382 Pfam mTERF 179 347 IPR003690 GO:0003690|GO:0006355
Lja6g2211 382 PANTHER CGI-12 PROTEIN-RELATED 29 375 IPR003690 GO:0003690|GO:0006355
Lja6g2211 382 Gene3D Transcription termination factor 3, mitochondrial 179 360 IPR038538 -
Lja6g2211 382 Gene3D Transcription termination factor 3, mitochondrial 57 178 IPR038538 -
Lja6g2211 382 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
Lja6g2211 382 SMART mt_12 92 123 IPR003690 GO:0003690|GO:0006355
Lja6g2211 382 SMART mt_12 197 225 IPR003690 GO:0003690|GO:0006355
Lja6g2211 382 SMART mt_12 296 330 IPR003690 GO:0003690|GO:0006355
Lja6g2211 382 SMART mt_12 128 159 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2211 Lja-Chr6 51093475 51094623 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja6g2211 mTERF 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2211 K15032 - gmx:102667698 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1269 4 11272071 11273509 Lja6g2211 6 51093475 51094623 PCT