Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2208 ATGGTTGATATTAACATCGGAGGCAGAGGCAGTTCCTCAAGCGACATTAATGGTGGCGGCGTGAAGGAACAAGAGCGGTTGCTGCCAATAGCCAATGTTGGTCGGATAATGAAGCAGAGCTTACCTCAGAACGCGAAAATCTCGAAGGAGGCGAAGGAAACAATGCAGGAATGCGTGTCGGAGTTCATAAGCTTCGTGACGAGCGAGGCCTCGGAGAAGTGCCGGAAGGAGAGGAGGAAGACGGTGAATGGTGAGGACATTTGCTGGGCACTGACAACACTGGGTTTTGATGAGTATGCAGATACAATGAGGAGGTACTTGCATAGGTACAGAGAGTTAGAGGTGGATAAGCAGCTCAATAGTAATCAAGAAAACAGAGGAAATAGCCCTCATCATGAAGAGAAAGATCATGAACTACATAAATTGCACCCTCGAGGAGGAGTTAATTAA 450 0.4733 MVDINIGGRGSSSSDINGGGVKEQERLLPIANVGRIMKQSLPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGEDICWALTTLGFDEYADTMRRYLHRYRELEVDKQLNSNQENRGNSPHHEEKDHELHKLHPRGGVN* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2208 149 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 136 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja6g2208 149 MobiDBLite consensus disorder prediction 118 149 - -
Lja6g2208 149 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g2208 149 Gene3D Histone, subunit A 16 144 IPR009072 GO:0046982
Lja6g2208 149 MobiDBLite consensus disorder prediction 127 149 - -
Lja6g2208 149 SUPERFAMILY Histone-fold 24 134 IPR009072 GO:0046982
Lja6g2208 149 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Lja6g2208 149 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 136 - -
Lja6g2208 149 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lja6g2208 149 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Lja6g2208 149 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Lja6g2208 149 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2208 Lja-Chr6 51056390 51056839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2208 21 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.320 8.63e-54 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja6g2208 CBFD_NFYB_HMF 3.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2208 K08065 - gmx:100794513 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2208 6 51056390 51056839 Lja6g2208 6 51056390 51056839 ECH