Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2203 ATGTTCAGTCAGAGCATGGATCCTGCAAGGGGTGCTAGTGGTGTTGGAGGGACTGTGTTAATTCCCATGCGGTTCGTGTGGCCGTACGGTGGAAGGAGTGTATTTCTTACTGGTTCTTTCACAGGGTGGTCTGAACCTCTACCAATGTCGCCAGTCGAAGGTTGCCCAACTGTGTTTCAAGTTATTTATAGCTTGCCTCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAGTGGCGGCATGATGAGCATCAACCTTGTGTACCTGGAGATTATGGGATAGTCAACACTGTCTTATTGGCTACTGATCCTAACTACATACCTGTTATAACTACAGATGCAGCGTCTGAAAATAACATGGATGTGGATAATGAGGCTTTTCGCCGTATGCAAATCCGGTTGACAGATGGTACATTGAGTGAGGTGCTGCCAAGAATATCAGATGCTGATGTACAGATCTCCCGTCAACGTATTTCTGCATTTCTATCGATGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCCTTGGACGTTGATTTGCCAGTGAAACAAGCATTTCATATACTGCATGAGCAGGGAATTTACATAGCTCCTCTCTGGGACTTCAGCAAGGGGCAATTTGTTGGTGTTCTTAGTGCTGTGGATTTTGTCTTAATTTTAAGAGAGCTGGGGAATCATGGATCCAATCTGACAGAAGAGGAACTTGAAACACATACCATATCAGCTTGGAAAGAAGGAAAGTCATATCTAAACAGACAGAACAACAGACATGGAATTGCATTATCAAGACTTTTTATCCATGCAGGGCCATATGATAACCTGAAAGATATTGCCATGAAGATCTTGCAAAAGGAGGTTTCAACAGTTCCTATTATGCATTCGTCTTCTGAAGATGGTTCATACCCACAGTTACTGCATCTTGCTTCACTTTCAGGAATACTTAAATGCATTTGTAGGTATTTTAGGCACTGCTCTAGTTCATTGCCTATACTTCAATTTCCAATCTGTGCAATACCTGTGGGAACGTGGGTACCTAAAATCGGGGAATCAAGTCGGCGGCCCTTAGCAATGTTGAGACCAAGCTCTTCTCTTGCTGCAGCCCTAAATTTATTAGTTCAAGCCGAAGTTAGTTCAATACCAATAGTTGATGATAATGACTCATTACTGGATATATATTGTCGGAGTGACATAACGGCTTTGGCAAAGGACAGAGCATATTCTCACATCAATCTTGATGAGATGACTGTTCATGAGGCTTTGCAGTTGGGCCAGGACGCATATAGTCCGTATGAACTCAGAAGTCAAAGATGTCAGATGTGCTTACGCTCTGATTCGCTGCAAAAAGTCATGGAACGGTTGGCAAATCCAGGTGTGAGGCGGCTTGTTATTGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATTGTTTCATTGAGTGACATATTCAAGTTCTTTCTTGGTTAG 1476 0.4316 MFSQSMDPARGASGVGGTVLIPMRFVWPYGGRSVFLTGSFTGWSEPLPMSPVEGCPTVFQVIYSLPPGYHQYKFFVDGEWRHDEHQPCVPGDYGIVNTVLLATDPNYIPVITTDAASENNMDVDNEAFRRMQIRLTDGTLSEVLPRISDADVQISRQRISAFLSMHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIYIAPLWDFSKGQFVGVLSAVDFVLILRELGNHGSNLTEEELETHTISAWKEGKSYLNRQNNRHGIALSRLFIHAGPYDNLKDIAMKILQKEVSTVPIMHSSSEDGSYPQLLHLASLSGILKCICRYFRHCSSSLPILQFPICAIPVGTWVPKIGESSRRPLAMLRPSSSLAAALNLLVQAEVSSIPIVDDNDSLLDIYCRSDITALAKDRAYSHINLDEMTVHEALQLGQDAYSPYELRSQRCQMCLRSDSLQKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLG* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2203 491 CDD E_set_AMPKbeta_like_N 22 100 - -
Lja6g2203 491 SMART cbs_1 441 490 IPR000644 -
Lja6g2203 491 SMART cbs_1 177 226 IPR000644 -
Lja6g2203 491 SMART cbs_1 359 407 IPR000644 -
Lja6g2203 491 Gene3D Immunoglobulins 18 101 IPR013783 -
Lja6g2203 491 Pfam CBS domain 444 490 IPR000644 -
Lja6g2203 491 Pfam CBS domain 357 403 IPR000644 -
Lja6g2203 491 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 14 491 - -
Lja6g2203 491 SUPERFAMILY CBS-domain pair 158 328 IPR046342 -
Lja6g2203 491 ProSiteProfiles CBS domain profile. 171 233 IPR000644 -
Lja6g2203 491 ProSiteProfiles CBS domain profile. 355 418 IPR000644 -
Lja6g2203 491 Gene3D - 340 491 IPR046342 -
Lja6g2203 491 Gene3D - 148 331 IPR046342 -
Lja6g2203 491 SUPERFAMILY CBS-domain pair 356 490 IPR046342 -
Lja6g2203 491 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 14 491 - -
Lja6g2203 491 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Lja6g2203 491 ProSiteProfiles CBS domain profile. 437 491 IPR000644 -
Lja6g2203 491 SUPERFAMILY E set domains 21 102 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2203 Lja-Chr6 51004306 51010629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2203 17 129 Protein tyrosine phosphatase (PTP) family AT3G01510 31.967 3.15e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2203 - - gmx:100785692 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1258 4 11100595 11106786 Lja6g2203 6 51004306 51010629 PCT