Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja6g2197 | ATGGAAGCTTATGGCGGTTACATGGTGGACGAGAAAGCCGTTAGGGTTGAAAACGCTTTCTTAGAATTTCTCAAAAGTTTCAGGACGAATCGGAACGAGCTCTGCTACGAATCGGAGATTGAAGTGATGAAAGCCAATGAATCCAACACTATGTTCATCGATTTCGACCATGTCAGTAAATTCAGTAATCACCTTGGTGAAGCTATCTTCGATGAATATTTGAGGTTTGAGCCTTTTTTGAAGAATGCTTGTTTGAGATTCGTCATGGAGCTGAAGCCGACGTTCATTTCTGATGATAACCCTAACAAGGACATCAATATTGCTTTCTACAACCTTCCACATGTCAAGCGGTTAAGGGAATTGGCTACATCAGAAATCGGGAAGCTTGTATCGGTGACCGGAGTGGTAACAAGGACAAGCGAGGTTCGACCGGAGCTTCTCCAAGGGACTTTCAAGTGCCTGGAATGTGGTGGTGTTATCAAGAATGTTGAGCAGCAATTCAAATACTCTGAGCCAACTATATGTGTTAATGCGACTTGTAACAACAGAACTAAGTGGGCGCTGCTGCGCCAGGAGAGCAAATTTGCTGACTGGCAAAGGGTCAGAATGCAGGAGACATCCAAAGAGATACCTGCAGGCTCTTTGCCGAGGTCACTGGATGTTATTCTTCGTCATGAGATTGTGGAACAAGCTAGGGCTGGTGACACGGTGATTTTCACTGGTACTGTAGTTGTTATACCTGATATAATGGCATTGGCATCCCCTGGAGAAAGATCAGAGTGCCGGAGGGAAGCTTCTCAACGCAAGGGGTCTGCTGTTGGAAATGATGGTGTGAGGGGCCTCAGGGCTTTGGGAGTCAGAGACCTCTCCTATCGTCTAGCTTTTATTGCGAACTCTGTTCAGATTTGTGATGGAAGAAGTGAAACAGACATCAGAAATAGAAAGAAGGATACAGATGAAGATGATCAGCAGTTTTCTGAACAGGAACGGGCTGAAGTTCAACGAATGAGGAACACTCCAGATTTCTTCAACAAACTTGTTGGGAGCATTTCTCCAGCTGTTTATGGTCATGCAGATATTAAGCGAGCAATCCTTTTTATGCTTATGGGCGGTGTCCACAAAGTAACTCATGAAGGAATCAACCTCAGAGGCGATATAAACGTTTGTATTGTTGGAGATCCCAGCTGTGCAAAGTCTCAATTTCTCAAGTATACTTCAGGCATTGTTCCAAGATCTGTGTATACATCTGGGAAATCATCATCTGCTGCTGGTTTGACTGCAACTGTTGCAAAGGAACCCGAAACTGGAGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCGGACAATGGCATTTGCTGCATCGATGAATTTGACAAGATGGATATCAGAGATCAGGTCGCAATTCATGAGGCCATGGAACAGCAGACTATTAGTATCACAAAAGCAGGAATACAAGCTACTCTTAATGCCCGTACTTCCATTCTTGCTGCTGCCAACCCCGCTGGTGGACGCTATGATAAGTCTAAACCACTAAAGTATAATGTGGCTCTTCCACCGGCTATACTTTCAAGGTTTGATCTTGTATATGTCATGATTGATGACCCAGACGATGAAACAGACCACTGCATAGCTGATCACATTGTGAGAGTTCATCAAAAGCGTGAAAGTGCTCTTACTCCAGAATTCACTACTGCACAACTGAAGCGCTATATAGCATATGCAAAAACTCTTAAACCCAAGCTCACATCGGAGGCCAGAAAAGTACTGGTCGATTCTTATGTTGCTCTCCGTCGAAGTGATTCAAATCCTGGGACCAGGGTTGCATATCGTATGACAGTTAGGCAGTTGGAGGCATTAATCAGGCTGTCTGAGGCCATTGCACGGTGTCATTTGGAAGATCAGGTACAAGCTCGACATGTTCGTTTAGCAGTTACACTTCTGAAAACATCCGTCATAAATGTGCAGTCCAGCGAGATCGATCTATCTGAGTTTCAAGAAGCAGATAGGGATGAAGGGGCAGGTAATGGTGATGGAAATGATTCAAATGGCAATGCTAGAGATGCTGATGATCAAGCGGGAAACACTACTGCTCAGCAAGCTGCTGGAACTGATGAAAACCCAGCAGATGGAGTTCAATCCCAGGCGAAGAAACTTATTATAAGTGATGAATATTTTCAGAGAGTTACCAGGGCCCTTATCATGCGTCTTAGACAGCACGAAGAGACTGTTACACAAGATGGAACCGGTTTGGCTGGGATGAGGCAACGAGATTTGATTCAATGGTATGCAAACCAGCAAAATGAGAAAAACAACTACAGTTCCATGGAGGAGGCAGCAGCAGAAGTTTCCAAAATTAAAGCTATTATAGAGAGTTTAATTCGAAGGGAGGGTCATTTGATAGTAGTAGATGATGGTAGGCAAGCAGGGGCGGAAGCTGGTGGTGCAGTCTCTAGAAACGATCGAATTTTAGCCGTGGCTCCCAATTATGTTATTGATTGA | 2502 | 0.4436 | MEAYGGYMVDEKAVRVENAFLEFLKSFRTNRNELCYESEIEVMKANESNTMFIDFDHVSKFSNHLGEAIFDEYLRFEPFLKNACLRFVMELKPTFISDDNPNKDINIAFYNLPHVKRLRELATSEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYSEPTICVNATCNNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDIMALASPGERSECRREASQRKGSAVGNDGVRGLRALGVRDLSYRLAFIANSVQICDGRSETDIRNRKKDTDEDDQQFSEQERAEVQRMRNTPDFFNKLVGSISPAVYGHADIKRAILFMLMGGVHKVTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDETDHCIADHIVRVHQKRESALTPEFTTAQLKRYIAYAKTLKPKLTSEARKVLVDSYVALRRSDSNPGTRVAYRMTVRQLEALIRLSEAIARCHLEDQVQARHVRLAVTLLKTSVINVQSSEIDLSEFQEADRDEGAGNGDGNDSNGNARDADDQAGNTTAQQAAGTDENPADGVQSQAKKLIISDEYFQRVTRALIMRLRQHEETVTQDGTGLAGMRQRDLIQWYANQQNEKNNYSSMEEAAAEVSKIKAIIESLIRREGHLIVVDDGRQAGAEAGGAVSRNDRILAVAPNYVID* | 834 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja6g2197 | 833 | MobiDBLite | consensus disorder prediction | 311 | 333 | - | - | |
| Lja6g2197 | 833 | Pfam | MCM N-terminal domain | 18 | 111 | IPR027925 | - | |
| Lja6g2197 | 833 | Gene3D | - | 118 | 246 | IPR012340 | - | |
| Lja6g2197 | 833 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 9 | 787 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lja6g2197 | 833 | CDD | MCM6 | 345 | 651 | - | - | |
| Lja6g2197 | 833 | Pfam | MCM AAA-lid domain | 567 | 651 | IPR041562 | - | |
| Lja6g2197 | 833 | Gene3D | - | 8 | 114 | - | - | |
| Lja6g2197 | 833 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM6 | 9 | 787 | - | - | |
| Lja6g2197 | 833 | Coils | Coil | 776 | 796 | - | - | |
| Lja6g2197 | 833 | MobiDBLite | consensus disorder prediction | 663 | 713 | - | - | |
| Lja6g2197 | 833 | Gene3D | - | 714 | 833 | - | - | |
| Lja6g2197 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 73 | 85 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Lja6g2197 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 165 | 182 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Lja6g2197 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 277 | 298 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Lja6g2197 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 218 | 229 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Lja6g2197 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 115 | 127 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Lja6g2197 | 833 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 248 | IPR012340 | - | |
| Lja6g2197 | 833 | Pfam | MCM6 C-terminal winged-helix domain | 717 | 832 | IPR041024 | - | |
| Lja6g2197 | 833 | Pfam | MCM P-loop domain | 331 | 552 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lja6g2197 | 833 | Pfam | MCM OB domain | 118 | 246 | IPR033762 | - | |
| Lja6g2197 | 833 | Gene3D | - | 323 | 670 | IPR027417 | - | |
| Lja6g2197 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 443 | 457 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lja6g2197 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 522 | 530 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lja6g2197 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 471 | 484 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lja6g2197 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 383 | 398 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lja6g2197 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 495 | 507 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lja6g2197 | 833 | MobiDBLite | consensus disorder prediction | 678 | 711 | - | - | |
| Lja6g2197 | 833 | SMART | mcm | 114 | 653 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lja6g2197 | 833 | Gene3D | - | 145 | 196 | - | - | |
| Lja6g2197 | 833 | ProSitePatterns | MCM family signature. | 451 | 459 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Lja6g2197 | 833 | ProSiteProfiles | MCM family domain profile. | 342 | 548 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lja6g2197 | 833 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 353 | 653 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja6g2197 | Lja-Chr6 | 50968180 | 50973698 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja6g2197 | 1 | 833 | Core DNA Replication Machinery Family | AT5G44635 | 71.363 | 0.0 | 1261 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja6g2197 | K02542 | - | gmx:100787290 | 1334.7 |