Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2187 ATGGTTCATATCGGTTACCATGCAAGAGCTCCAAATTTAGGCAAAGAAAACGCTAATGAGGTTTGCACAAACCCTCGTGAAGGATTGAACAATAGAACACCAACCAAGAAAGCCAGAAGAAAAAGAAGAACAGAACAACCAAAAATGGCTTCTTCCCAAGTTGAAATCGCTTCTTCTTCGCCTTTCGGTTGTGTTCTGAGGGACCGTAATCGCCGCGATGGATGCAGGGAATCCACCGGTTTCCAAAAAAACATCAAGAACTTTGTCATGGACCACCTCAACACATGCATCTCCACCATATCCTCTGACTCTGCAACAAATGAGAATAAGGAACAGAATCAGATGAACAATGCTGCAGCTTCTTGGGTTTCAAAGCCTGCAAATAGCAACAATCTTGCGAGGCTCCGTTTCAAGAGAAACAATCACAGCAACATCAACAACAGCAATGACAATAATGAATCTTCTTTGGCTTCCTTGATCAGCCCGAGACACTCTCGTCTTCTTGATCGATGGGCAGCGAAACAAGCTCGCCAGATGGTGTCGACGTTGGAGAACGAGGAGGCTGAGTTGTTAGCCATTGACAACAATAGCAACAACAACAACAGCATTCTTACAAGAACATCTAGTTCTAATTCTGATGAGTTTTCATCTGAATTTGCAAAGACAAAGCTTGGTGCATCTTCCCTGGTTCAGATATGGGAGAAGAGGCTGAACAAGTCCAGTGTATCCAAGCCCAACACACCAATTGAGAGGTCCAGTTCCAATTCTGCTACCAGCAGCATTGAAATTACTTTCTCTGTGGCAGAGCAAAGCAGAGTGTTAGAAACAGGGGAAACAGGGGAATGTTGTGAACTGCCTTCAGGGAATGAGGAACCGTTCCCTGATTGGGAATCTGACAAGACAGGACAGAGTAGTGATCAATCCGTTTCGCCGCCACGAGGGAGGTGGAGTTCTTCTGAGAGCAGCGACAGGGTCAGTGTTGCAAACATCATAAAGAGGCTTCAAACACAGAATGATGACAATGATCATGAAGGGTGTGGTGGTACTAGTAGTGTGGCAGATTCACCTTCCGCAGCAGAGAATTCAGAACAGAGAGTTTTTCCCCAGGTAACTTGTACCCCGAGAGTTAGAGGGCGCAAGGCGTTCGATGATTTGCTCATGAAGTTGGAGCAGGACAGGCATGGGGAGCTGAAGAACCTTTCAGAACGTGGAGCTGTCTCCAAGTTCACACAAAGAGGTCGCATTCAGGCATCGCTTCGACTTAGATTGTTACAACGTGGGGTGGTAGTTAATGAGCCCTACCGCTTGAAATCAACAGCATCTGAAGTGAACAGACAACCAGCACAGGGATCTGCAATTATGCAACTAAGGGAAAAATTTAGCAATGGAGCTGAACAGAGAAAAACAGTCCAAGCAGAAGTAGCAAGCCCAAAAAGTCCTCATAAGGAGATAGCAAACAAAACCACACAATTGGATAACTCTTCCAGTGTTGATCAAATCAACAAAGACAAAAGCAGCAAGACATCTCATGGCACTGCCAATCAATCTACAGAATCCACACAAAAGTCAGTGTCTAAGACTAGCGAAGATCATAAGAGACAAGAAGCTCATCCAAGTTCAGATATCACACTCCAAGAAACACGTTTTGAGGCTCGGCATGATGTCAAGCAGGAAACTGCTGAGGCAACTACATCCAGGCCTGATTCAATTCCAGATGAGAGGACAGACAAGGCAGAAACCAGCAACCAACAGCATGCTATGAGCAAAAGCAGTTATGAAGAAACATTGGATGAGTTAGAAGCAAATCATAAGAGACAAGAAGCTCATCCAAGTTCAGATATCACACTCCAAGAAACACGTTTCGAGGCTCGGTATGATGTCAAGCAGGAAACTGCTGAGGCAACTACATCCAGGCCTGATTCAATTCCAGATGAGAGGACAGACAAGGAAGAGACCAGCAACCAACAGCATGCTATGAGCAAAAGCAGTTATGAAGAAACAGTGGATGAGGTAGAAGCAAGTAACCAGCAGCATGCTGAAACCAGTCTTGACAATGCAGTAGAAGAGGACTATGCTGAAAGCAGTTATGAAGAGTTAGTGGAAGAGTTGGTCATTGATCAGGATTATTGTGAAACTAATTATGATTGGATCAGTGAAATATCTCGGCCTAAGAGCTACTGGGAAGAACGTAGGCAAGCATGGTATAGAGAGATGCTTGACTCAGGTTCTCAAAAAGAGGATATAAGGAAGCTTCTTGAGAGAAGAACAGTGTCAACTTTCCTTACAAGTGATTTCCGGGAAACAATGGATAGATTGATGCAATCTCATAGGGGAACACAAACACATTTAATCAATAGTGAAGATGATGAGGAAGACAATCAAGGGTTGATAGCATTTTTAAAAGAACGCATGCATTCCGCCAGCCCTTCTCAAGAAGAAGGAAGAGAGAGAGGCGGGGATGAAGAGGAGGAGAGGATGGAAGAGGAAGTAGAAGAGGAGGAGGAGAAAGAAGATGAGGATGAGCATGAGCATGAAGTTGGTGTTTATTCTAATCCCTCCTTAGCATGGAGTTTCAGAGACCATGAAGCTAGCGATGACTTTGATAGAGTTGCTTCTACATCCTCACAACCTTATCAAGCTCAGTCTTATGGAGATAGTCGCCGGAACTCTTCATCCTCCCATCATAATTCAATTGAAATGGAGCTCATATATGATATGAGAAGCAATATGGAGCAACTTTACCGTGAGATGTCTGAGCTAAGGAAATCTATACAAAGCTGCATGGATATGCAGATGCAATTACAACAAGCCATGAACCAAGAGGTTCTCACAGTTAAAAAAGAAGAAAAGAAGTTTCATAACAGGGCCCCTAAAAAAGGAAACTGCTGCATTTGCTACGATATGAAAGTTGACTCAGTTTTATACAGGTGTGGACACATGTGTACGTGTCTGAAGTGTGCCAATGAGTTGCAATGGAACAGTGGGAAATGCCCAATATGTCGAGCTAAAATAGTAGATGTTGTTCGTGTATACGTTGATGTTTAG 3045 0.4381 MVHIGYHARAPNLGKENANEVCTNPREGLNNRTPTKKARRKRRTEQPKMASSQVEIASSSPFGCVLRDRNRRDGCRESTGFQKNIKNFVMDHLNTCISTISSDSATNENKEQNQMNNAAASWVSKPANSNNLARLRFKRNNHSNINNSNDNNESSLASLISPRHSRLLDRWAAKQARQMVSTLENEEAELLAIDNNSNNNNSILTRTSSSNSDEFSSEFAKTKLGASSLVQIWEKRLNKSSVSKPNTPIERSSSNSATSSIEITFSVAEQSRVLETGETGECCELPSGNEEPFPDWESDKTGQSSDQSVSPPRGRWSSSESSDRVSVANIIKRLQTQNDDNDHEGCGGTSSVADSPSAAENSEQRVFPQVTCTPRVRGRKAFDDLLMKLEQDRHGELKNLSERGAVSKFTQRGRIQASLRLRLLQRGVVVNEPYRLKSTASEVNRQPAQGSAIMQLREKFSNGAEQRKTVQAEVASPKSPHKEIANKTTQLDNSSSVDQINKDKSSKTSHGTANQSTESTQKSVSKTSEDHKRQEAHPSSDITLQETRFEARHDVKQETAEATTSRPDSIPDERTDKAETSNQQHAMSKSSYEETLDELEANHKRQEAHPSSDITLQETRFEARYDVKQETAEATTSRPDSIPDERTDKEETSNQQHAMSKSSYEETVDEVEASNQQHAETSLDNAVEEDYAESSYEELVEELVIDQDYCETNYDWISEISRPKSYWEERRQAWYREMLDSGSQKEDIRKLLERRTVSTFLTSDFRETMDRLMQSHRGTQTHLINSEDDEEDNQGLIAFLKERMHSASPSQEEGRERGGDEEEERMEEEVEEEEEKEDEDEHEHEVGVYSNPSLAWSFRDHEASDDFDRVASTSSQPYQAQSYGDSRRNSSSSHHNSIEMELIYDMRSNMEQLYREMSELRKSIQSCMDMQMQLQQAMNQEVLTVKKEEKKFHNRAPKKGNCCICYDMKVDSVLYRCGHMCTCLKCANELQWNSGKCPICRAKIVDVVRVYVDV* 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2187 1014 Pfam Zinc finger, C3HC4 type (RING finger) 959 1006 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 806 821 - -
Lja6g2187 1014 CDD mRING-HC-C3HC5_NEU1 961 1001 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 524 539 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 464 595 - -
Lja6g2187 1014 ProSiteProfiles Zinc finger RING-type profile. 962 1001 IPR001841 -
Lja6g2187 1014 PANTHER BNAC05G24000D PROTEIN 49 1013 - -
Lja6g2187 1014 PANTHER BNAC05G24000D PROTEIN 49 1013 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 546 580 - -
Lja6g2187 1014 Coils Coil 903 930 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 240 259 - -
Lja6g2187 1014 Coils Coil 816 845 - -
Lja6g2187 1014 Coils Coil 582 609 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 869 895 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 277 365 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 802 853 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 822 841 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 627 655 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 17 31 - -
Lja6g2187 1014 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 935 1013 IPR013083 -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 867 895 - -
Lja6g2187 1014 SUPERFAMILY RING/U-box 946 1006 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 482 523 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 16 57 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 627 694 - -
Lja6g2187 1014 MobiDBLite consensus disorder prediction 298 365 - -
Lja6g2187 1014 SMART ring_2 962 1000 IPR001841 -
Lja6g2187 1014 Coils Coil 173 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2187 Lja-Chr6 50877722 50882539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2187 962 1010 C3H Transcription Factor Family AT3G06140 40.816 1.86e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2187 - - lja:Lj6g3v1417010.1 1203.73