Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2186 ATGGCTGCAACAATGAGGATGAATTCAGCACTTGCTATGCTGTTCCTGTTGTACTTTTCTTGTTATGGTTTAGACAATGAAAGCACTTTGAAAGTCCTTTTGGAGGTTAAAACATCATTTCTGGAAGACCCTGAGAATGTTCTGAGTACTTGGTCAGAGAACAACACTGATTATTGTACTTGGAGAGGGGTATCATGTGGTGGAGTGAAGAACAAGGTGGTGGTCGGACTCGACCTGTCTGACTCGTCACTCAGTGGATCAATATCACCCTCACTCGGTGGTTTGCAAACTCTGCTCCACCTTGATCTCTCTTCGAACCTTCTCAATGGCACCATTCCTCCTACCCTCTCCAACCTCTCTTCGTTGGAGTCTCTGGTTCTCCACTCCAACCAGCTCAGTGGTCACATTCCCACCGAGTTAGGCTCACTACTGAGTCTCCGAGTTCTGCTAATCGGTGACAATGACCTCACTGGTGTGATTCCCGCGTCACTTGGTAATCTGGTTAATCTCGTTAGGCTTGGTTTAGCTTCATGCAGCCTCACCGGTTCTATTCCATCTCAACTCGGGAAACTCACTGAGTTAGAAGATTTGATCCTGCAGTACAATGAGTTGACTGGTCCGATTCCAACTGAACTTGGGAGCTGCTCAAGCCTCACCACCTTCACTGCTGCAAATAATGGCCTCAATGGCTCGATCCCGAGTGAACTTGGTCAGCTCAGGAAACTCCAAACTCTCAACCTTGCCAACAACAGCTTAACAGGGGAGATTCCGAGTCAACTCGGGAAACTCACTGAACTTCTTTATCTGAATTTACAGGGGAACCAGCTTGAGGGTGTTGTTCCATCATCACTAGCTCAACTGGGTAAGCTTCAAACTCTTGACTTGTCCATGAACATGCTCAGTGGAAGAATTCCAGTGGAGTTAGGCAACTTAGGCCAGTTACAGTCCCTTGTTCTCTCTTGGAATCGACTCTCTGGGACTATTCCAAGGACCATATGTTCCAATGCAACTAGTTTGGAGCAATTGTTGATATCAGAGAATGGACTAGAGGGTGAAATCCCAGTTGAGTTGGGTCAATGCCATTCACTGAAACAGCTTGACTTGTGCAACAATTCTCTCAGTGGAACAATACCACTTGAAGTTTATGGGTTGAAGAGGCTAACTCATCTCTTGCTTTGCAACAACAGTTTGGTTGGTTCAATCTCTCCCTTCATAGGAAACCTCACAAACTTGGAGGGTCTTGGATTGTATTACAACCACTTGCAGGGTCCTCTGCCTAGAGAGATTGGGAAGCTTGAGAAGCTGCAAATACTTTATCTCTATGACAACATGTTATCAGGGAACATACCTTTGGAGATTGGCAATTGTTCAAGTTTGCAGATGATTGATTTCTTTGGGAACAATTTCACTGGGAAGATTCCCAACACTATTGGGAGATTGAAAGAGTTGAGCTTTCTTCACCTTAGGCAGAATGATCTTGTAGGTGAGATTCCCACTACCCTTGGTAATTGTCATAATCTGACTATACTGGATTTGGCAGATAACTATCTCTCAGGTGGTATTCCTGCAACATTTGGATCCCTCAGAGCCTTGCAGCAGTTAATGCTCTACAACAATTCTCTTGAAGGTAGCCTTCCTCACCAACTTATTAATCTAGCAAACTTGACAAGAGTGAATCTTTCAAATAACAGTCTCAATGGTAGTTTGGTTCCATTGTGTAGCTCTCGGAAGTTTCTTTCTTTTGATGTCTCAAATAATGCATTTGAAGGTGAAATCCCCTCTCAACTGGGAAACTCACCCTCACTTGACAGGCTAAGATTAGGTAATAACAAGCTTTCTGGTCAAATCCCAAGGACATTGGGAAAAATCACTAAACTGTCATTGTTAGACCTCTCTATGAATTCACTTATAGGACAAGTACCAGATGAGCTTTCTTTGTGTAGTTACCTATTGGTCATTCATTTAAAAAACAACCTTCTTGCTGGGCACATGCCATCATGGCTTGGAAAATTGCCTCTATTGGTAGAGCTTGATCTCTCTTTCAATCAATTTTCTGGTCCTCTTCCACAAGGCTTATTCAAACTACCCAAGTTGATGTTTCTGTCTTTGAGTAACAATTCTCTTAATGGAACTCTCTCGGATGATATTGGTGATCTTGAATCCCTTGAAATTCTCAGACTTGATCATAATCAATTCTTTGGACCAATCCCTCATTCAATAGGTAAGTTGGGGACGAATAGAGAGCCAGGGACAAATTTTCGAGAGCTCCAACTATCCGGGAATAGCTTTAGTGGTGAGATACCGCCTGAGATTGGTAATCTTAAAGATCTCCGAACCATTTTAGACCTGAGTAACAATAATCTCTCTGGTCACATCCCATCTTCACTTAACTTGCTTTCAAACTTGGAAGCACTTGATCTTTCGCACAATCAACTCACTGGAAAAGTTTCTCTATCACCTAGTGACAGTGAAATGGGGAGCTTGGTGAAGTTTAATATCTCTTACAATAACCTTGAAGGTGAATTGGATAAGCGATTCTCTCGCTGGCCACGTGGCATGTTTGAAGGGAACCTTCATCTTTGTGGAGCCTCTCTTGGGCCCTGCAATCCCGGCAATAAGCCATCAGGCTTAAGTCAGATATCAGTGGTCATAGTTTCTGCCATTTCTACTTTATTTGCAATTGCACTACTAGTACTTGCAGTGACTATGTTCAAGAAAAACAAGCAAGATTTTCTTTGGAAAGGCAGTGAATTCGGTCGTGCTTTCTCCTCCTCCTCTTCATCACAAGCAAAGAAACAACCACCATTCCTTCTAAGTGCTGCTGGAAAAATTGATTTCAGGTGGGAAGACGTCACAGCTGCCACAAACAATTTGAGTGATGACTTCATAGTTGGTGCGGGAGGTTCTGGGACAGTCTATAGAGTTGAATTTCCCACTGGAGAAACTGTGGCTGCCAAGAAGATTTCATGGAAAGATGAGTATCTGTTACACAAGAGTTTCATGAGAGAAGTTAAGACATTGGGGAGGATCAGGCATAGACATCTGGTGAAACTGTTAGGTTGTTGCAGCAATAGGAACAAAGGAGGAACTGGTTGGAATCTGCTGATATATGAGTACATGGAGAATGGGAGTGTATGGGATTGGCTTCATGGAAATCCTCTCAGAGCAAAGAAGAAGGGTCTAGATTGGGACACGAGGTTCAATATTGCTCTTGGATTAGCTCAAGGAGTGGAGTACCTTCATCATGATTGTGTGCCAAAGATCATTCATAGAGACATCAAATCCAGCAACATATTACTAGATTCCAGAATGGATGCACACTTGGGAGATTTTGGACTAGCAAAATCACTCATTGAGAATAATGACTCTAATACTGAGTCAACTTCTTGCTTTGCAGGGTCTTATGGTTACATAGCCCCAGAGTATGCATACACACTGAAGGCAACAGAGAAGACTGATGTGTACAGCATGGGGATTGTGCTTATGGAGCTTGTAAGTGGTAGGATGCCAACTGATGCAGGTTTTGGAGCAGGCATGGACATGGTGAGGTGGGTAGAGATGCACATTGACATGGAAGGAACTGCGCGTGAGGGAGTGATAGATCCTGAGTTGAAACCTCTTTTACCTGTTGAGGAGTTTGCTGCATTCCAAGTTCTTGAGATAGCTGTTCAGTGCACAAAAACTGCACCACAAGAGAGGCCTTCATCAAGGCAAGTGAGTGATCTTCTTGTGCATGTGGCTAAGAACAAAAAGGTGAACTTTGAGAAGATTGAAGAGAAAGGCAGGGATATTTGA 3795 0.4332 MAATMRMNSALAMLFLLYFSCYGLDNESTLKVLLEVKTSFLEDPENVLSTWSENNTDYCTWRGVSCGGVKNKVVVGLDLSDSSLSGSISPSLGGLQTLLHLDLSSNLLNGTIPPTLSNLSSLESLVLHSNQLSGHIPTELGSLLSLRVLLIGDNDLTGVIPASLGNLVNLVRLGLASCSLTGSIPSQLGKLTELEDLILQYNELTGPIPTELGSCSSLTTFTAANNGLNGSIPSELGQLRKLQTLNLANNSLTGEIPSQLGKLTELLYLNLQGNQLEGVVPSSLAQLGKLQTLDLSMNMLSGRIPVELGNLGQLQSLVLSWNRLSGTIPRTICSNATSLEQLLISENGLEGEIPVELGQCHSLKQLDLCNNSLSGTIPLEVYGLKRLTHLLLCNNSLVGSISPFIGNLTNLEGLGLYYNHLQGPLPREIGKLEKLQILYLYDNMLSGNIPLEIGNCSSLQMIDFFGNNFTGKIPNTIGRLKELSFLHLRQNDLVGEIPTTLGNCHNLTILDLADNYLSGGIPATFGSLRALQQLMLYNNSLEGSLPHQLINLANLTRVNLSNNSLNGSLVPLCSSRKFLSFDVSNNAFEGEIPSQLGNSPSLDRLRLGNNKLSGQIPRTLGKITKLSLLDLSMNSLIGQVPDELSLCSYLLVIHLKNNLLAGHMPSWLGKLPLLVELDLSFNQFSGPLPQGLFKLPKLMFLSLSNNSLNGTLSDDIGDLESLEILRLDHNQFFGPIPHSIGKLGTNREPGTNFRELQLSGNSFSGEIPPEIGNLKDLRTILDLSNNNLSGHIPSSLNLLSNLEALDLSHNQLTGKVSLSPSDSEMGSLVKFNISYNNLEGELDKRFSRWPRGMFEGNLHLCGASLGPCNPGNKPSGLSQISVVIVSAISTLFAIALLVLAVTMFKKNKQDFLWKGSEFGRAFSSSSSSQAKKQPPFLLSAAGKIDFRWEDVTAATNNLSDDFIVGAGGSGTVYRVEFPTGETVAAKKISWKDEYLLHKSFMREVKTLGRIRHRHLVKLLGCCSNRNKGGTGWNLLIYEYMENGSVWDWLHGNPLRAKKKGLDWDTRFNIALGLAQGVEYLHHDCVPKIIHRDIKSSNILLDSRMDAHLGDFGLAKSLIENNDSNTESTSCFAGSYGYIAPEYAYTLKATEKTDVYSMGIVLMELVSGRMPTDAGFGAGMDMVRWVEMHIDMEGTAREGVIDPELKPLLPVEEFAAFQVLEIAVQCTKTAPQERPSSRQVSDLLVHVAKNKKVNFEKIEEKGRDI* 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2186 1264 ProSiteProfiles Protein kinase domain profile. 958 1248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2186 1264 SMART serkin_6 958 1248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2186 1264 SUPERFAMILY RNI-like 77 398 - -
Lja6g2186 1264 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 11 1259 - -
Lja6g2186 1264 Gene3D Transferase(Phosphotransferase) domain 1 1040 1263 - -
Lja6g2186 1264 PRINTS Leucine-rich repeat signature 799 812 - -
Lja6g2186 1264 PRINTS Leucine-rich repeat signature 363 376 - -
Lja6g2186 1264 SUPERFAMILY Protein kinase-like (PK-like) 938 1243 IPR011009 -
Lja6g2186 1264 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 11 1259 - -
Lja6g2186 1264 Pfam Protein kinase domain 963 1239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g2186 1264 SMART LRR_typ_2 384 408 IPR003591 -
Lja6g2186 1264 SMART LRR_typ_2 480 504 IPR003591 -
Lja6g2186 1264 SMART LRR_typ_2 671 695 IPR003591 -
Lja6g2186 1264 SMART LRR_typ_2 239 262 IPR003591 -
Lja6g2186 1264 SMART LRR_typ_2 432 456 IPR003591 -
Lja6g2186 1264 SMART LRR_typ_2 719 743 IPR003591 -
Lja6g2186 1264 SMART LRR_typ_2 311 335 IPR003591 -
Lja6g2186 1264 SMART LRR_typ_2 287 310 IPR003591 -
Lja6g2186 1264 SMART LRR_typ_2 263 286 IPR003591 -
Lja6g2186 1264 SMART LRR_typ_2 119 143 IPR003591 -
Lja6g2186 1264 SMART LRR_typ_2 799 825 IPR003591 -
Lja6g2186 1264 SMART LRR_typ_2 528 552 IPR003591 -
Lja6g2186 1264 SMART LRR_typ_2 191 215 IPR003591 -
Lja6g2186 1264 ProSitePatterns Protein kinases ATP-binding region signature. 964 987 IPR017441 GO:0005524
Lja6g2186 1264 ProSiteProfiles Leucine-rich repeat profile. 801 822 IPR001611 GO:0005515
Lja6g2186 1264 Gene3D Phosphorylase Kinase; domain 1 919 1039 - -
Lja6g2186 1264 Gene3D Ribonuclease Inhibitor 222 382 IPR032675 -
Lja6g2186 1264 Gene3D Ribonuclease Inhibitor 526 872 IPR032675 -
Lja6g2186 1264 SUPERFAMILY RNI-like 581 841 - -
Lja6g2186 1264 Pfam Leucine rich repeat 506 565 IPR001611 GO:0005515
Lja6g2186 1264 Pfam Leucine rich repeat 240 300 IPR001611 GO:0005515
Lja6g2186 1264 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1088 1100 IPR008271 GO:0004672|GO:0006468
Lja6g2186 1264 Gene3D Ribonuclease Inhibitor 459 525 IPR032675 -
Lja6g2186 1264 Gene3D Ribonuclease Inhibitor 28 143 IPR032675 -
Lja6g2186 1264 Pfam Leucine rich repeat N-terminal domain 31 66 IPR013210 -
Lja6g2186 1264 SUPERFAMILY L domain-like 334 660 - -
Lja6g2186 1264 Gene3D Ribonuclease Inhibitor 144 221 IPR032675 -
Lja6g2186 1264 Gene3D Ribonuclease Inhibitor 383 458 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2186 Lja-Chr6 50864168 50868904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2186 153 816 Receptor kinase-like Gene Family AT1G17750 36.446 7.13e-95 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja6g2186 Pkinase 8.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2186 - - gmx:100797153 1687.93