Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2179 ATGGCTTCTTCTTCCTTTCATCTTTATCAGCCTACACACTGCTTCTTCTCCAACACCCAGTTCACAGGTCTGCGCCATGGCTTCTTCTGCCGACCCACTTACTCTCATGCTCAAAACAAAGTGCAACCCATCAAAGCTTCCGTTGCTGCACCCCCATTTCCATTGTTTCAGCCTCCCAAAGTTGAAGAACCAACGTCTGAGTTGGAGCCTGCAGACCCTGACTTCTATAGGATCGGTTATGTTCGGAGCATGCGAGCTTACGGGATTGATTTTAAGGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAACCTCTTCGCCGGCCTAGGGTTATAATGGAAATTCCTCTTGAATTGATGCTAACCATAAGCAAGAAGCTACCGTGGATGTTTTTCCCTGATATAATTCCCATTGGTCATCCAATATTTGATATTATCAACTCGACAAATCCAGAGACAGATTTGGACTTAAGGTTAGCATGCCTCCTCTTATATTCATTTGACTGCCAAGAAAACTTTTGGCAGTTATATGGTGACTTCTTACCAAGCGCAGATGAGAGCACTAGCTTACTTCTAGCTACAGAGGAGGAACTTTTGGAGCTGCAGGATCCTAATCTTGCTTCTACTATGAGAAGTCAGCAACAACGAGCATTAGAATTCTGGGAGAAAAACTGGCATAGTGGTGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCAGAGGTTCATTTGGGCAGTAGGTATTGCACAATCACGATGTATTAATATGCAAATGAGAGTTGGTGCGTTAACTCAAAACGCAAACATGCTGGTTCCTTATGCCGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTTCATTGGCGTTTTAAGGACCGGATGCTTGAAGTTCTTATAAATGCTGGGAGGCGGATTAAAAAGGGAGATGAGATGACAGTTAATTACATGAGTGGTATGAAGAATGACATGTTAATGCAAAAATATGGATTTTCGTCACCTGTGAATCCTTGGGATACGATCGAATTCTCAGGCAATGCACGTATTCATTTGGAATCCTTCTTGTCAATCTTCAATATATCTGGCCTTCCAGAGGAGTATTTCCATAACACAGATAATCTATCGAACGAGGGGGATACTTTTGTTGATGGAGCAGTCATAGCTGCAGCGCGAACATTGCCAACATGGTCAGATGGGGATGTGCCTCCGGTCCCCAGTGCAGAAAGAAAGGCTGTGAAGACGTTACAAGACGAATGCCAAAAGATGCTTTCTGGATTCGCTACAACTTCAAAGCAAGACCAGAAATTGCTAGATTCCTTGCCTGAAGCTACAAGAACACTTGAAGCTGCACTAAAGTATAGATTGCACCGAAAATTGTTCATTGAGAAAGTTATGCAAGCATTGGAGATCTATCAAGAGAGAATACTATTCTGA 1446 0.4288 MASSSFHLYQPTHCFFSNTQFTGLRHGFFCRPTYSHAQNKVQPIKASVAAPPFPLFQPPKVEEPTSELEPADPDFYRIGYVRSMRAYGIDFKEGPDGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPIGHPIFDIINSTNPETDLDLRLACLLLYSFDCQENFWQLYGDFLPSADESTSLLLATEEELLELQDPNLASTMRSQQQRALEFWEKNWHSGAPLKIKRLARDPQRFIWAVGIAQSRCINMQMRVGALTQNANMLVPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGRRIKKGDEMTVNYMSGMKNDMLMQKYGFSSPVNPWDTIEFSGNARIHLESFLSIFNISGLPEEYFHNTDNLSNEGDTFVDGAVIAAARTLPTWSDGDVPPVPSAERKAVKTLQDECQKMLSGFATTSKQDQKLLDSLPEATRTLEAALKYRLHRKLFIEKVMQALEIYQERILF* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2179 481 SUPERFAMILY SET domain 96 336 IPR046341 -
Lja6g2179 481 Gene3D set domain protein methyltransferase, domain 1 81 335 - -
Lja6g2179 481 CDD SET_LSMT 88 335 - -
Lja6g2179 481 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 49 474 - -
Lja6g2179 481 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 49 474 - -
Lja6g2179 481 Pfam Rubisco LSMT substrate-binding 410 462 IPR015353 -
Lja6g2179 481 ProSiteProfiles SET domain profile. 76 321 IPR001214 GO:0005515
Lja6g2179 481 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 333 477 IPR036464 -
Lja6g2179 481 Pfam SET domain 97 320 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2179 Lja-Chr6 50790709 50795673 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja6g2179 SET 5.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2179 - - gmx:100790985 804.668