Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2159 ATGGCTCCCGCCGGCAAAGACCTGCAGCTCACTCCCCTCACCGCCGGCCGGACCACCACCGCCGATGACTCCGATTCCGACGACCTAGAGGACGTGCGCCTCCTTGACTCCTACGACCGAAACGATGCCACGATGCGGCGAATTCAGGTCAGAGTCTCCGGCATGACATGCGCCGCTTGCTCCACTTCCGTTGAGTCGGCTCTGAAATCCCTCGACGGCGTTTCTACCGCCTCCGTCGCCTTGCTACAGAACAAAGCCGACGTCGTTTTCAACCCGGCTCAGCTCAAGGATGAAGACATTAAAAATGCTATTGAAGATGCAGGGTTTGAAGCAGATATATTACCTGAATCTAGTACCTCTGGAAAGGTTCCACATAGAACCCTGGTGGGACAGTTCACAATTGGAGGTATGACATGTGCAGCCTGTGTGAATTCCGTCGAAGGTATTTTGAGAAATATTCCAGGGGTCAAAAGAGCTGAGGTAGCCTTGGCTACTTCATTAGGAGAAGTTGAGTATGACCCCAGTGTAATTAGTAAAGATGATATAGTCAATGCAATCGAGGATTCTGGTTTCGAGGCGGCATTTGTACAGAGCAATGAGCAGGATAAAATAATTTTAGAGGTTGTTGGTGTGTACAGTTTGATAGATGCACAGGTTTTAGAAGGCATGCTTAGTAGCATGAAAGGAGTAAGACAGTTCCGTTTTGACCAGAGATCAGGTGTACTAGATGTTCTGTTCGACCCTGAAGTTCTCAGTTCTAGATCCTTGGTTGATGGGATCCAGGGGGGAAGCAATGGAAAGTTTAAATTACATGTTAGAAGCCCGTATACAAGGATGGCTTTCAAAGATGTTGAAGAGACCTCCACTATGTTTCGACTCTTTCTCTCCAGTCTGTTTCTTAGTATCCCTCTCTTCTTGATGAAGGTAGTTTGTCCTCATATACCATTAATATATTCCTTGTTACTTTGGAGATGTGGCCCTTTCCTCATGGATGATTGGTTGAAATGGGCATTGGTGAGTGTCATCCAATTTGTGATTGGGAAGCGCTTTTACATTGCAGCTGGCAGGGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGATTGCTGTGGGCACTACTGCGTCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGCGCTCTTACTGGATTTTGGTCCCCAACTTACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGGAATCCCTTGCTAAGGGAAAGACATCTGATGCCATCAAGAAATTAGTAGAACTTGCTCCTCCAACAGCTTTATTAGTTGTCAAAGATAAAGGTGGTAAATCTATTGAAGAAAGGGAAATTGATTCTTTGCTTGTTCAACCTGGTGACACATTGAAAGTTCTTCCTGGCACGAAGATTCCTGCAGATGGTATCGTTACGTGGGGCTCAAGTTATGCAAATGAGAGCATGGTAACGGGCGAATCTGCACCTGTTTTGAAGGAGGTGGGTGCTTCTGTTATTGGAGGTACAATAAATTTGCACGGCGTCCTTCACATTCAAGCTAGCAAAGTAGGATCCGATACAGTTTTGAGTCAGATAATTAGTTTGGTTGAGACGGCCCAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTGGCAAGTATATTTGTTCCTACAGTTGTTTCGTTAGCATTATTGACATTATTGGGTTGGTATATTGCTGGCTCTATTGGAGCTTACCCAGAAGAATGGCTTCCAGAAAATGGAAATCACTTTGTTTTTGCCCTAATGTTCTCAATATCTGTAGTGGTTATTGCATGTCCCTGTGCACTTGGCTTGGCAACCCCAACCGCTGTCATGGTGGCGACAGGGGTTGGGGCTAACAATGGAGTATTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGATGGTGAAGCATGTGATATTTGATAAAACTGGTACTCTAACTCAGGGAAAAGCCTCTGTTACTACTGCCAAGGTATTCACTGGAATGCAACGTGGGGAATTTCTCACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTGGCAAGAGCGATATTAGCATATGCACGCCATTTTCATTTCTTTGATGACTCTTCAGCTACAACTGATACCCTGAATGATGTGAAGTCTGGGTGGCTTTTTGATGTCTCAGACTTCTCTGCTCTCCCAGGAAGAGGTGTCCAATGCCTTATAGATGGGAAGCGTATCTTGGTTGGTAATAGGAAGCTGATGGTGGAAAATGGTATAGATATTTCAACGGAAGTGGAAAATTTTGTGGTTGAGCTGGAACAAAATGCACAAACAGGGATACTGGTAGCATATGATGATATATTAATTGGAGTTTTAGGGGTTGCGGACCCACTGAAGAGAGAAGCTTGTGTAGTTATAGAGGGCCTCCAGAAAATGGGTGTCATACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCGTGCTGTCGCAAAGGAGGTTGGCATCCGAGATGTTAAGGCAGAGGTTATGCCTGCGGGAAAGGCTGACATTGTACGCTCATTCCAAAAAGATGGAAGCTTGGTTGCAATGGTGGGTGATGGTATCAATGATTCTCCTGCATTAGCTGCTGCTGATGTTGGCATGGCAATCGGGGCTGGAACTGACGTTGCAATAGAAGCTGCTAACTTTGTGTTGATGAGGAATAACTTGGAAGATGTGATCACAGCTATTGATCTTTCCCGGAAAACCTTTTCTCGCATCCGGTTGAATTATGTATTTGCAATGGCTTACAACGTTGTGGCTATACCAGTTGCCGCTGGGGTTTTATATCCTTCTTTGGGGATCAAGCTGCCACCCTGGGTTTCTGGTGCATGCATGGCTCTCTCTTCTGTAAGTGTAGTATGCTCTTCTTTGCTTCTTAAAAGATATAGAAGACCTAGACTTACTGCAGTACTTGAAATACTTGTAGAGTAA 2985 0.4482 MAPAGKDLQLTPLTAGRTTTADDSDSDDLEDVRLLDSYDRNDATMRRIQVRVSGMTCAACSTSVESALKSLDGVSTASVALLQNKADVVFNPAQLKDEDIKNAIEDAGFEADILPESSTSGKVPHRTLVGQFTIGGMTCAACVNSVEGILRNIPGVKRAEVALATSLGEVEYDPSVISKDDIVNAIEDSGFEAAFVQSNEQDKIILEVVGVYSLIDAQVLEGMLSSMKGVRQFRFDQRSGVLDVLFDPEVLSSRSLVDGIQGGSNGKFKLHVRSPYTRMAFKDVEETSTMFRLFLSSLFLSIPLFLMKVVCPHIPLIYSLLLWRCGPFLMDDWLKWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLIAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLESLAKGKTSDAIKKLVELAPPTALLVVKDKGGKSIEEREIDSLLVQPGDTLKVLPGTKIPADGIVTWGSSYANESMVTGESAPVLKEVGASVIGGTINLHGVLHIQASKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTLLGWYIAGSIGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKHVIFDKTGTLTQGKASVTTAKVFTGMQRGEFLTLVASAEASSEHPLARAILAYARHFHFFDDSSATTDTLNDVKSGWLFDVSDFSALPGRGVQCLIDGKRILVGNRKLMVENGIDISTEVENFVVELEQNAQTGILVAYDDILIGVLGVADPLKREACVVIEGLQKMGVIPVMVTGDNWRTARAVAKEVGIRDVKAEVMPAGKADIVRSFQKDGSLVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAANFVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPRLTAVLEILVE* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2159 994 SUPERFAMILY HAD-like 650 974 IPR036412 -
Lja6g2159 994 ProSiteProfiles Heavy-metal-associated domain profile. 129 195 IPR006121 GO:0046872
Lja6g2159 994 CDD HMA 49 111 IPR006121 GO:0046872
Lja6g2159 994 ProSitePatterns Heavy-metal-associated domain. 52 82 IPR017969 GO:0046872
Lja6g2159 994 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 404 678 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja6g2159 994 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 738 948 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja6g2159 994 TIGRFAM TIGR00003: copper ion binding protein 48 111 IPR006122 GO:0005507
Lja6g2159 994 TIGRFAM TIGR00003: copper ion binding protein 131 193 IPR006122 GO:0005507
Lja6g2159 994 Gene3D - 618 925 IPR023214 -
Lja6g2159 994 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Lja6g2159 994 PRINTS P-type cation-transporting ATPase superfamily signature 868 887 - -
Lja6g2159 994 PRINTS P-type cation-transporting ATPase superfamily signature 793 804 - -
Lja6g2159 994 PRINTS P-type cation-transporting ATPase superfamily signature 651 665 - -
Lja6g2159 994 PRINTS P-type cation-transporting ATPase superfamily signature 891 903 - -
Lja6g2159 994 PRINTS P-type cation-transporting ATPase superfamily signature 815 825 - -
Lja6g2159 994 Pfam E1-E2 ATPase 432 630 - -
Lja6g2159 994 SUPERFAMILY HMA, heavy metal-associated domain 43 115 IPR036163 GO:0046872
Lja6g2159 994 Gene3D - 419 541 - -
Lja6g2159 994 SUPERFAMILY HMA, heavy metal-associated domain 129 200 IPR036163 GO:0046872
Lja6g2159 994 PANTHER ATP7, ISOFORM B 19 987 - -
Lja6g2159 994 MobiDBLite consensus disorder prediction 1 27 - -
Lja6g2159 994 SUPERFAMILY Calcium ATPase, transmembrane domain M 384 943 IPR023298 -
Lja6g2159 994 CDD HMA 131 194 IPR006121 GO:0046872
Lja6g2159 994 Gene3D - 45 116 - -
Lja6g2159 994 Gene3D - 749 799 IPR023299 GO:0000166
Lja6g2159 994 Gene3D - 658 748 IPR023299 GO:0000166
Lja6g2159 994 SFLD p-type atpase 633 920 IPR044492 -
Lja6g2159 994 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872
Lja6g2159 994 Pfam haloacid dehalogenase-like hydrolase 647 882 - -
Lja6g2159 994 PRINTS Copper-transporting ATPase 1 signature 47 72 - -
Lja6g2159 994 PRINTS Copper-transporting ATPase 1 signature 73 96 - -
Lja6g2159 994 PRINTS Copper-transporting ATPase 1 signature 102 122 - -
Lja6g2159 994 Pfam Heavy-metal-associated domain 50 110 IPR006121 GO:0046872
Lja6g2159 994 Pfam Heavy-metal-associated domain 132 192 IPR006121 GO:0046872
Lja6g2159 994 CDD P-type_ATPase_Cu-like 292 964 - -
Lja6g2159 994 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 365 977 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lja6g2159 994 SUPERFAMILY Calcium ATPase, transduction domain A 451 537 IPR008250 -
Lja6g2159 994 PANTHER HEAVY METAL P-TYPE ATPASE 19 987 - -
Lja6g2159 994 ProSitePatterns Heavy-metal-associated domain. 134 163 IPR017969 GO:0046872
Lja6g2159 994 Gene3D - 130 195 - -
Lja6g2159 994 ProSitePatterns E1-E2 ATPases phosphorylation site. 653 659 IPR018303 -
Lja6g2159 994 SFLD C1.7: P-type atpase like 633 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2159 Lja-Chr6 50609223 50615320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2159 1 994 Primary Pumps ATPases AT5G44790 73.591 0.0 1497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2159 K17686 - gmx:100804960 1683.31